Hb_005539_340

Information

Type -
Description -
Location Contig5539: 265091-268508
Sequence    

Annotation

kegg
ID rcu:RCOM_0463570
description hypothetical protein
nr
ID XP_012085335.1
description PREDICTED: CDT1-like protein a, chloroplastic [Jatropha curcas]
swissprot
ID Q9SJW9
description CDT1-like protein a, chloroplastic OS=Arabidopsis thaliana GN=CDT1A PE=1 SV=1
trembl
ID A0A067JRG9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17709 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48406: 265309-266878 , PASA_asmbl_48408: 267207-268380
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005539_340 0.0 - - PREDICTED: CDT1-like protein a, chloroplastic [Jatropha curcas]
2 Hb_000116_030 0.124203206 - - PREDICTED: protein GRIP [Jatropha curcas]
3 Hb_003177_020 0.1363954303 - - diphthine synthase, putative [Ricinus communis]
4 Hb_000787_150 0.1401784064 - - PREDICTED: protein NDR1-like [Jatropha curcas]
5 Hb_005779_010 0.1406844283 - - catalytic, putative [Ricinus communis]
6 Hb_002675_110 0.1423935838 - - PREDICTED: uncharacterized protein LOC105634948 [Jatropha curcas]
7 Hb_000071_170 0.1430422462 - - PREDICTED: uncharacterized protein LOC105628261 [Jatropha curcas]
8 Hb_001486_160 0.143654224 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
9 Hb_106552_020 0.1444561281 - - PREDICTED: serine/arginine-rich splicing factor RS2Z33 isoform X1 [Jatropha curcas]
10 Hb_004355_030 0.1449534717 - - fumarylacetoacetate hydrolase, putative [Ricinus communis]
11 Hb_002445_100 0.1467494486 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 5 isoform X2 [Jatropha curcas]
12 Hb_000211_120 0.1473655852 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
13 Hb_000086_700 0.1493656232 - - PREDICTED: 14-3-3 protein 6 [Jatropha curcas]
14 Hb_000330_060 0.1497272911 - - PREDICTED: adenosine kinase [Jatropha curcas]
15 Hb_008160_030 0.1501104281 - - DNA binding protein, putative [Ricinus communis]
16 Hb_000236_490 0.150863602 - - 20 kD nuclear cap binding protein, putative [Ricinus communis]
17 Hb_012114_080 0.1510496527 - - gamma-glutamylcysteine synthetase [Hevea brasiliensis]
18 Hb_000174_150 0.1512750392 - - stearoyl-acyl-carrier protein desaturase [Ricinus communis]
19 Hb_001366_090 0.1520482755 transcription factor TF Family: NAC hypothetical protein RCOM_1341380 [Ricinus communis]
20 Hb_000185_070 0.1528082713 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005539_340 Hb_005539_340 Hb_000116_030 Hb_000116_030 Hb_005539_340--Hb_000116_030 Hb_003177_020 Hb_003177_020 Hb_005539_340--Hb_003177_020 Hb_000787_150 Hb_000787_150 Hb_005539_340--Hb_000787_150 Hb_005779_010 Hb_005779_010 Hb_005539_340--Hb_005779_010 Hb_002675_110 Hb_002675_110 Hb_005539_340--Hb_002675_110 Hb_000071_170 Hb_000071_170 Hb_005539_340--Hb_000071_170 Hb_000238_040 Hb_000238_040 Hb_000116_030--Hb_000238_040 Hb_001241_010 Hb_001241_010 Hb_000116_030--Hb_001241_010 Hb_001584_350 Hb_001584_350 Hb_000116_030--Hb_001584_350 Hb_000330_060 Hb_000330_060 Hb_000116_030--Hb_000330_060 Hb_001579_330 Hb_001579_330 Hb_000116_030--Hb_001579_330 Hb_002889_010 Hb_002889_010 Hb_000116_030--Hb_002889_010 Hb_002471_240 Hb_002471_240 Hb_003177_020--Hb_002471_240 Hb_003363_080 Hb_003363_080 Hb_003177_020--Hb_003363_080 Hb_002445_060 Hb_002445_060 Hb_003177_020--Hb_002445_060 Hb_003177_020--Hb_002889_010 Hb_002445_100 Hb_002445_100 Hb_003177_020--Hb_002445_100 Hb_001377_310 Hb_001377_310 Hb_003177_020--Hb_001377_310 Hb_000787_150--Hb_001584_350 Hb_000086_500 Hb_000086_500 Hb_000787_150--Hb_000086_500 Hb_000174_150 Hb_000174_150 Hb_000787_150--Hb_000174_150 Hb_002965_040 Hb_002965_040 Hb_000787_150--Hb_002965_040 Hb_000205_130 Hb_000205_130 Hb_000787_150--Hb_000205_130 Hb_001258_100 Hb_001258_100 Hb_000787_150--Hb_001258_100 Hb_004994_010 Hb_004994_010 Hb_005779_010--Hb_004994_010 Hb_005779_010--Hb_002445_100 Hb_000163_220 Hb_000163_220 Hb_005779_010--Hb_000163_220 Hb_000816_250 Hb_000816_250 Hb_005779_010--Hb_000816_250 Hb_003861_050 Hb_003861_050 Hb_005779_010--Hb_003861_050 Hb_000005_220 Hb_000005_220 Hb_005779_010--Hb_000005_220 Hb_184798_080 Hb_184798_080 Hb_002675_110--Hb_184798_080 Hb_005918_010 Hb_005918_010 Hb_002675_110--Hb_005918_010 Hb_007811_050 Hb_007811_050 Hb_002675_110--Hb_007811_050 Hb_002046_110 Hb_002046_110 Hb_002675_110--Hb_002046_110 Hb_001153_190 Hb_001153_190 Hb_002675_110--Hb_001153_190 Hb_000684_510 Hb_000684_510 Hb_002675_110--Hb_000684_510 Hb_000210_250 Hb_000210_250 Hb_000071_170--Hb_000210_250 Hb_002447_080 Hb_002447_080 Hb_000071_170--Hb_002447_080 Hb_002007_150 Hb_002007_150 Hb_000071_170--Hb_002007_150 Hb_002820_030 Hb_002820_030 Hb_000071_170--Hb_002820_030 Hb_006502_060 Hb_006502_060 Hb_000071_170--Hb_006502_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.16723 3.30202 4.13987 3.09181 1.49813 1.79231
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.76688 2.1598 1.21311 3.68367 0.950086

CAGE analysis