Hb_000071_170

Information

Type -
Description -
Location Contig71: 213882-218265
Sequence    

Annotation

kegg
ID pop:POPTR_0013s13080g
description hypothetical protein
nr
ID XP_012065040.1
description PREDICTED: uncharacterized protein LOC105628261 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID U5FVS8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s13080g PE=4 SV=1
Gene Ontology
ID GO:0009165
description elongation factor 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55200: 215665-215783 , PASA_asmbl_55201: 215878-216441 , PASA_asmbl_55202: 216670-218141
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000071_170 0.0 - - PREDICTED: uncharacterized protein LOC105628261 [Jatropha curcas]
2 Hb_000210_250 0.1221200666 - - PREDICTED: testis-expressed sequence 10 protein isoform X1 [Jatropha curcas]
3 Hb_002447_080 0.1356942539 - - Angio-associated migratory cell protein, putative [Ricinus communis]
4 Hb_005539_340 0.1430422462 - - PREDICTED: CDT1-like protein a, chloroplastic [Jatropha curcas]
5 Hb_002007_150 0.1433425223 - - -
6 Hb_002820_030 0.1496992048 - - PREDICTED: uncharacterized protein LOC105638922 [Jatropha curcas]
7 Hb_006502_060 0.1545385433 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000522_150 0.1624192854 - - PREDICTED: uncharacterized protein LOC105646670 [Jatropha curcas]
9 Hb_005488_020 0.1632238287 - - PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Jatropha curcas]
10 Hb_002900_090 0.1635668751 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105646817 [Jatropha curcas]
11 Hb_005207_050 0.1647568759 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 39 [Jatropha curcas]
12 Hb_013726_070 0.1648494159 - - PREDICTED: UPF0202 protein At1g10490-like [Jatropha curcas]
13 Hb_012762_030 0.1656341319 - - PREDICTED: uncharacterized protein LOC105634062 [Jatropha curcas]
14 Hb_000922_360 0.1657490093 - - -
15 Hb_000521_330 0.1659277409 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000690_150 0.1662063547 - - PREDICTED: uncharacterized protein LOC105628582 [Jatropha curcas]
17 Hb_000738_020 0.1667627748 - - zinc finger protein, putative [Ricinus communis]
18 Hb_005000_260 0.1668212861 - - recA family protein [Populus trichocarpa]
19 Hb_009296_070 0.1675247425 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
20 Hb_109484_010 0.167739613 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]

Gene co-expression network

sample Hb_000071_170 Hb_000071_170 Hb_000210_250 Hb_000210_250 Hb_000071_170--Hb_000210_250 Hb_002447_080 Hb_002447_080 Hb_000071_170--Hb_002447_080 Hb_005539_340 Hb_005539_340 Hb_000071_170--Hb_005539_340 Hb_002007_150 Hb_002007_150 Hb_000071_170--Hb_002007_150 Hb_002820_030 Hb_002820_030 Hb_000071_170--Hb_002820_030 Hb_006502_060 Hb_006502_060 Hb_000071_170--Hb_006502_060 Hb_000521_330 Hb_000521_330 Hb_000210_250--Hb_000521_330 Hb_009296_070 Hb_009296_070 Hb_000210_250--Hb_009296_070 Hb_000189_600 Hb_000189_600 Hb_000210_250--Hb_000189_600 Hb_001377_190 Hb_001377_190 Hb_000210_250--Hb_001377_190 Hb_000210_250--Hb_002007_150 Hb_000617_230 Hb_000617_230 Hb_000210_250--Hb_000617_230 Hb_003020_280 Hb_003020_280 Hb_002447_080--Hb_003020_280 Hb_005488_020 Hb_005488_020 Hb_002447_080--Hb_005488_020 Hb_003994_120 Hb_003994_120 Hb_002447_080--Hb_003994_120 Hb_005054_230 Hb_005054_230 Hb_002447_080--Hb_005054_230 Hb_004450_040 Hb_004450_040 Hb_002447_080--Hb_004450_040 Hb_000116_030 Hb_000116_030 Hb_005539_340--Hb_000116_030 Hb_003177_020 Hb_003177_020 Hb_005539_340--Hb_003177_020 Hb_000787_150 Hb_000787_150 Hb_005539_340--Hb_000787_150 Hb_005779_010 Hb_005779_010 Hb_005539_340--Hb_005779_010 Hb_002675_110 Hb_002675_110 Hb_005539_340--Hb_002675_110 Hb_003849_110 Hb_003849_110 Hb_002007_150--Hb_003849_110 Hb_002007_150--Hb_000521_330 Hb_003906_200 Hb_003906_200 Hb_002007_150--Hb_003906_200 Hb_003464_090 Hb_003464_090 Hb_002007_150--Hb_003464_090 Hb_000347_250 Hb_000347_250 Hb_002007_150--Hb_000347_250 Hb_000868_090 Hb_000868_090 Hb_002007_150--Hb_000868_090 Hb_000738_020 Hb_000738_020 Hb_002820_030--Hb_000738_020 Hb_011457_150 Hb_011457_150 Hb_002820_030--Hb_011457_150 Hb_012239_020 Hb_012239_020 Hb_002820_030--Hb_012239_020 Hb_000424_060 Hb_000424_060 Hb_002820_030--Hb_000424_060 Hb_000010_110 Hb_000010_110 Hb_002820_030--Hb_000010_110 Hb_000069_380 Hb_000069_380 Hb_002820_030--Hb_000069_380 Hb_001246_110 Hb_001246_110 Hb_006502_060--Hb_001246_110 Hb_000869_080 Hb_000869_080 Hb_006502_060--Hb_000869_080 Hb_000522_150 Hb_000522_150 Hb_006502_060--Hb_000522_150 Hb_000164_020 Hb_000164_020 Hb_006502_060--Hb_000164_020 Hb_001766_060 Hb_001766_060 Hb_006502_060--Hb_001766_060 Hb_059480_010 Hb_059480_010 Hb_006502_060--Hb_059480_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.6319 3.26071 2.45455 2.34776 0.59112 1.03118
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.04488 3.03714 1.67908 3.05001 1.79481

CAGE analysis