Hb_003994_120

Information

Type -
Description -
Location Contig3994: 159601-161281
Sequence    

Annotation

kegg
ID vvi:100249538
description uncharacterized LOC100249538
nr
ID XP_011031240.1
description PREDICTED: uncharacterized protein LOC105130433 isoform X1 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A0A067JMB7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22572 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39741: 157942-161257
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003994_120 0.0 - - PREDICTED: uncharacterized protein LOC105130433 isoform X1 [Populus euphratica]
2 Hb_006637_070 0.0855925601 - - PREDICTED: pentatricopeptide repeat-containing protein At2g37230 [Jatropha curcas]
3 Hb_004586_420 0.0877373074 - - PREDICTED: uncharacterized protein LOC105630659 [Jatropha curcas]
4 Hb_023001_040 0.0911576143 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
5 Hb_005914_170 0.0985571158 - - PREDICTED: eukaryotic translation initiation factor isoform 4E-2-like [Gossypium raimondii]
6 Hb_003058_120 0.1065958479 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 4 homolog [Jatropha curcas]
7 Hb_006452_100 0.1076946815 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105629120 [Jatropha curcas]
8 Hb_023771_010 0.1084648409 - - basic helix-loop-helix-containing protein, putative [Ricinus communis]
9 Hb_001489_090 0.1094382106 - - PREDICTED: uncharacterized protein LOC105649775 [Jatropha curcas]
10 Hb_000460_030 0.1106775186 - - 4-hydroxybenzoate octaprenyltransferase, putative [Ricinus communis]
11 Hb_002357_060 0.1107946068 - - hypothetical protein CICLE_v10006112mg [Citrus clementina]
12 Hb_005588_060 0.1108791105 - - PREDICTED: succinate dehydrogenase subunit 5, mitochondrial [Jatropha curcas]
13 Hb_007218_120 0.1132524687 - - PREDICTED: pentatricopeptide repeat-containing protein At1g51965, mitochondrial [Jatropha curcas]
14 Hb_149985_010 0.1140249827 - - PREDICTED: transcription initiation factor IIB-2 [Cucumis sativus]
15 Hb_002042_020 0.1141876385 - - hypothetical protein CICLE_v10001869mg [Citrus clementina]
16 Hb_000853_150 0.1153148316 - - Fumarase 1 isoform 2 [Theobroma cacao]
17 Hb_001016_120 0.1153959648 - - PREDICTED: 3-dehydroquinate synthase, chloroplastic [Jatropha curcas]
18 Hb_004109_220 0.1162049513 - - PREDICTED: polyadenylate-binding protein-interacting protein 9-like [Populus euphratica]
19 Hb_000312_080 0.11652921 - - PREDICTED: transmembrane protein 97-like [Jatropha curcas]
20 Hb_004429_090 0.1171682442 - - PREDICTED: ras GTPase-activating protein-binding protein 1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003994_120 Hb_003994_120 Hb_006637_070 Hb_006637_070 Hb_003994_120--Hb_006637_070 Hb_004586_420 Hb_004586_420 Hb_003994_120--Hb_004586_420 Hb_023001_040 Hb_023001_040 Hb_003994_120--Hb_023001_040 Hb_005914_170 Hb_005914_170 Hb_003994_120--Hb_005914_170 Hb_003058_120 Hb_003058_120 Hb_003994_120--Hb_003058_120 Hb_006452_100 Hb_006452_100 Hb_003994_120--Hb_006452_100 Hb_001489_090 Hb_001489_090 Hb_006637_070--Hb_001489_090 Hb_003465_030 Hb_003465_030 Hb_006637_070--Hb_003465_030 Hb_006570_080 Hb_006570_080 Hb_006637_070--Hb_006570_080 Hb_006637_070--Hb_023001_040 Hb_007423_050 Hb_007423_050 Hb_006637_070--Hb_007423_050 Hb_006573_190 Hb_006573_190 Hb_004586_420--Hb_006573_190 Hb_000003_230 Hb_000003_230 Hb_004586_420--Hb_000003_230 Hb_007676_080 Hb_007676_080 Hb_004586_420--Hb_007676_080 Hb_008494_100 Hb_008494_100 Hb_004586_420--Hb_008494_100 Hb_004586_420--Hb_001489_090 Hb_000390_300 Hb_000390_300 Hb_004586_420--Hb_000390_300 Hb_023001_040--Hb_003058_120 Hb_149985_010 Hb_149985_010 Hb_023001_040--Hb_149985_010 Hb_005588_060 Hb_005588_060 Hb_023001_040--Hb_005588_060 Hb_000663_060 Hb_000663_060 Hb_023001_040--Hb_000663_060 Hb_001828_180 Hb_001828_180 Hb_023001_040--Hb_001828_180 Hb_000167_010 Hb_000167_010 Hb_023001_040--Hb_000167_010 Hb_000210_120 Hb_000210_120 Hb_005914_170--Hb_000210_120 Hb_011344_120 Hb_011344_120 Hb_005914_170--Hb_011344_120 Hb_001314_050 Hb_001314_050 Hb_005914_170--Hb_001314_050 Hb_031862_100 Hb_031862_100 Hb_005914_170--Hb_031862_100 Hb_003633_050 Hb_003633_050 Hb_005914_170--Hb_003633_050 Hb_005914_170--Hb_023001_040 Hb_000853_150 Hb_000853_150 Hb_003058_120--Hb_000853_150 Hb_003058_120--Hb_005588_060 Hb_000392_420 Hb_000392_420 Hb_003058_120--Hb_000392_420 Hb_003058_120--Hb_000167_010 Hb_004157_050 Hb_004157_050 Hb_003058_120--Hb_004157_050 Hb_006452_100--Hb_023001_040 Hb_001016_120 Hb_001016_120 Hb_006452_100--Hb_001016_120 Hb_000504_070 Hb_000504_070 Hb_006452_100--Hb_000504_070 Hb_004781_010 Hb_004781_010 Hb_006452_100--Hb_004781_010 Hb_006452_100--Hb_000853_150 Hb_006452_100--Hb_149985_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.93351 1.47277 1.57896 2.71616 1.28682 0.743521
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.04656 3.4654 1.99196 3.82383 2.08563

CAGE analysis