Hb_003020_280

Information

Type -
Description -
Location Contig3020: 166852-180937
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa026521mg
description hypothetical protein
nr
ID XP_007219793.1
description hypothetical protein PRUPE_ppa026521mg [Prunus persica]
swissprot
ID Q39547
description Cucumisin OS=Cucumis melo PE=1 SV=1
trembl
ID M5X4M0
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026521mg PE=4 SV=1
Gene Ontology
ID GO:0008233
description subtilase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31866: 165752-166092 , PASA_asmbl_31869: 167359-170312 , PASA_asmbl_31870: 170713-170919 , PASA_asmbl_31871: 175136-176268 , PASA_asmbl_31872: 179644-180638
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003020_280 0.0 - - hypothetical protein PRUPE_ppa026521mg [Prunus persica]
2 Hb_000538_160 0.0960154215 - - PREDICTED: RNA-binding protein 5 isoform X3 [Jatropha curcas]
3 Hb_006913_030 0.0984487592 - - PREDICTED: quinone oxidoreductase-like protein 2 homolog [Jatropha curcas]
4 Hb_002107_030 0.0984515623 - - PREDICTED: COPII coat assembly protein SEC16 isoform X1 [Jatropha curcas]
5 Hb_005054_230 0.0989978163 - - PREDICTED: wiskott-Aldrich syndrome protein family member 2 [Jatropha curcas]
6 Hb_000462_170 0.1010245397 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003294_070 0.1013033664 - - hypothetical protein RCOM_1714550 [Ricinus communis]
8 Hb_009486_140 0.1020335156 - - PREDICTED: uncharacterized protein LOC105643248 [Jatropha curcas]
9 Hb_000181_320 0.1045295098 - - PREDICTED: xylosyltransferase 2 [Jatropha curcas]
10 Hb_006198_120 0.1073996367 - - PREDICTED: guanine nucleotide-binding protein-like NSN1 [Jatropha curcas]
11 Hb_004450_040 0.1094419758 - - PREDICTED: DNA ligase 1 [Jatropha curcas]
12 Hb_001396_200 0.1101258415 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 4 isoform X1 [Jatropha curcas]
13 Hb_002447_080 0.1109572589 - - Angio-associated migratory cell protein, putative [Ricinus communis]
14 Hb_000329_470 0.111363509 - - ccr4-not transcription complex, putative [Ricinus communis]
15 Hb_001114_140 0.1137897372 - - PREDICTED: uncharacterized protein LOC105631631 [Jatropha curcas]
16 Hb_001369_730 0.1138490696 - - F5O11.10, putative isoform 1 [Theobroma cacao]
17 Hb_003226_180 0.1141462483 - - PREDICTED: uncharacterized protein C57A7.06 [Jatropha curcas]
18 Hb_006637_070 0.1144129257 - - PREDICTED: pentatricopeptide repeat-containing protein At2g37230 [Jatropha curcas]
19 Hb_000329_710 0.1156249207 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]
20 Hb_000041_110 0.1164012681 - - PREDICTED: WW domain-binding protein 11 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003020_280 Hb_003020_280 Hb_000538_160 Hb_000538_160 Hb_003020_280--Hb_000538_160 Hb_006913_030 Hb_006913_030 Hb_003020_280--Hb_006913_030 Hb_002107_030 Hb_002107_030 Hb_003020_280--Hb_002107_030 Hb_005054_230 Hb_005054_230 Hb_003020_280--Hb_005054_230 Hb_000462_170 Hb_000462_170 Hb_003020_280--Hb_000462_170 Hb_003294_070 Hb_003294_070 Hb_003020_280--Hb_003294_070 Hb_005271_190 Hb_005271_190 Hb_000538_160--Hb_005271_190 Hb_006198_120 Hb_006198_120 Hb_000538_160--Hb_006198_120 Hb_000441_120 Hb_000441_120 Hb_000538_160--Hb_000441_120 Hb_000792_010 Hb_000792_010 Hb_000538_160--Hb_000792_010 Hb_001008_120 Hb_001008_120 Hb_000538_160--Hb_001008_120 Hb_003529_170 Hb_003529_170 Hb_000538_160--Hb_003529_170 Hb_006913_030--Hb_002107_030 Hb_003226_180 Hb_003226_180 Hb_006913_030--Hb_003226_180 Hb_002499_040 Hb_002499_040 Hb_006913_030--Hb_002499_040 Hb_000365_120 Hb_000365_120 Hb_006913_030--Hb_000365_120 Hb_003158_010 Hb_003158_010 Hb_006913_030--Hb_003158_010 Hb_002942_190 Hb_002942_190 Hb_006913_030--Hb_002942_190 Hb_000329_470 Hb_000329_470 Hb_002107_030--Hb_000329_470 Hb_002107_030--Hb_005054_230 Hb_167498_010 Hb_167498_010 Hb_002107_030--Hb_167498_010 Hb_003050_220 Hb_003050_220 Hb_002107_030--Hb_003050_220 Hb_002107_030--Hb_003158_010 Hb_001369_730 Hb_001369_730 Hb_005054_230--Hb_001369_730 Hb_000930_030 Hb_000930_030 Hb_005054_230--Hb_000930_030 Hb_000009_090 Hb_000009_090 Hb_005054_230--Hb_000009_090 Hb_002890_290 Hb_002890_290 Hb_005054_230--Hb_002890_290 Hb_005116_160 Hb_005116_160 Hb_005054_230--Hb_005116_160 Hb_004450_040 Hb_004450_040 Hb_000462_170--Hb_004450_040 Hb_000708_030 Hb_000708_030 Hb_000462_170--Hb_000708_030 Hb_006831_140 Hb_006831_140 Hb_000462_170--Hb_006831_140 Hb_000317_050 Hb_000317_050 Hb_000462_170--Hb_000317_050 Hb_001301_150 Hb_001301_150 Hb_000462_170--Hb_001301_150 Hb_001946_400 Hb_001946_400 Hb_000462_170--Hb_001946_400 Hb_000181_400 Hb_000181_400 Hb_003294_070--Hb_000181_400 Hb_009079_030 Hb_009079_030 Hb_003294_070--Hb_009079_030 Hb_004324_130 Hb_004324_130 Hb_003294_070--Hb_004324_130 Hb_165928_030 Hb_165928_030 Hb_003294_070--Hb_165928_030 Hb_000181_320 Hb_000181_320 Hb_003294_070--Hb_000181_320 Hb_000003_320 Hb_000003_320 Hb_003294_070--Hb_000003_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.23508 0.858266 0.41191 0.722603 0.868276 0.53488
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.01254 1.19524 0.675516 1.14905 1.13048

CAGE analysis