Hb_005271_190

Information

Type -
Description -
Location Contig5271: 125463-131104
Sequence    

Annotation

kegg
ID rcu:RCOM_1686030
description dead box ATP-dependent RNA helicase, putative
nr
ID XP_002509758.1
description dead box ATP-dependent RNA helicase, putative [Ricinus communis]
swissprot
ID Q9C8S9
description Probable DEAD-box ATP-dependent RNA helicase 48 OS=Arabidopsis thaliana GN=RH48 PE=3 SV=1
trembl
ID B9RC74
description Dead box ATP-dependent RNA helicase, putative OS=Ricinus communis GN=RCOM_1686030 PE=4 SV=1
Gene Ontology
ID GO:0003676
description probable dead-box atp-dependent rna helicase 48

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47068: 125767-131051 , PASA_asmbl_47069: 127094-127798
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005271_190 0.0 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
2 Hb_000538_160 0.057859731 - - PREDICTED: RNA-binding protein 5 isoform X3 [Jatropha curcas]
3 Hb_006198_120 0.0691468536 - - PREDICTED: guanine nucleotide-binding protein-like NSN1 [Jatropha curcas]
4 Hb_003529_170 0.0764650379 - - PREDICTED: ATP-dependent RNA helicase DHX29 [Jatropha curcas]
5 Hb_001655_060 0.0828241522 - - PREDICTED: RNA-binding protein 28 [Jatropha curcas]
6 Hb_004954_070 0.0853336904 - - PREDICTED: uncharacterized protein LOC105645187 [Jatropha curcas]
7 Hb_001062_010 0.0895227984 - - PREDICTED: CWF19-like protein 2 [Jatropha curcas]
8 Hb_000441_120 0.0922206563 - - PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_003847_130 0.0922780913 - - cytochrome C oxidase assembly protein cox11, putative [Ricinus communis]
10 Hb_188126_010 0.0930012665 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25-like isoform X3 [Jatropha curcas]
11 Hb_000900_030 0.0941446999 - - PREDICTED: WD repeat-containing protein 3 [Jatropha curcas]
12 Hb_000788_070 0.0944186292 - - PREDICTED: pentatricopeptide repeat-containing protein At1g10270 [Jatropha curcas]
13 Hb_009486_180 0.0946172184 - - unknown [Glycine max]
14 Hb_017862_020 0.0964794752 - - PREDICTED: probable inactive serine/threonine-protein kinase lvsG [Jatropha curcas]
15 Hb_009175_020 0.0972799999 - - PREDICTED: uncharacterized protein LOC101303140 [Fragaria vesca subsp. vesca]
16 Hb_000265_230 0.0975635425 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105643603 isoform X1 [Jatropha curcas]
17 Hb_000011_230 0.0986031912 - - PREDICTED: bifunctional protein FolD 4, chloroplastic-like [Jatropha curcas]
18 Hb_000207_180 0.0992569094 - - PREDICTED: calponin homology domain-containing protein DDB_G0272472 [Jatropha curcas]
19 Hb_009270_020 0.1011664653 - - PREDICTED: LOW QUALITY PROTEIN: helicase and polymerase-containing protein TEBICHI [Jatropha curcas]
20 Hb_035755_010 0.1015864748 - - unknown [Populus trichocarpa]

Gene co-expression network

sample Hb_005271_190 Hb_005271_190 Hb_000538_160 Hb_000538_160 Hb_005271_190--Hb_000538_160 Hb_006198_120 Hb_006198_120 Hb_005271_190--Hb_006198_120 Hb_003529_170 Hb_003529_170 Hb_005271_190--Hb_003529_170 Hb_001655_060 Hb_001655_060 Hb_005271_190--Hb_001655_060 Hb_004954_070 Hb_004954_070 Hb_005271_190--Hb_004954_070 Hb_001062_010 Hb_001062_010 Hb_005271_190--Hb_001062_010 Hb_000538_160--Hb_006198_120 Hb_000441_120 Hb_000441_120 Hb_000538_160--Hb_000441_120 Hb_000792_010 Hb_000792_010 Hb_000538_160--Hb_000792_010 Hb_001008_120 Hb_001008_120 Hb_000538_160--Hb_001008_120 Hb_000538_160--Hb_003529_170 Hb_009079_030 Hb_009079_030 Hb_006198_120--Hb_009079_030 Hb_006198_120--Hb_003529_170 Hb_003913_070 Hb_003913_070 Hb_006198_120--Hb_003913_070 Hb_009486_180 Hb_009486_180 Hb_006198_120--Hb_009486_180 Hb_002641_030 Hb_002641_030 Hb_003529_170--Hb_002641_030 Hb_001266_100 Hb_001266_100 Hb_003529_170--Hb_001266_100 Hb_001614_060 Hb_001614_060 Hb_003529_170--Hb_001614_060 Hb_000788_070 Hb_000788_070 Hb_001655_060--Hb_000788_070 Hb_188126_010 Hb_188126_010 Hb_001655_060--Hb_188126_010 Hb_000740_100 Hb_000740_100 Hb_001655_060--Hb_000740_100 Hb_001655_060--Hb_001062_010 Hb_001789_040 Hb_001789_040 Hb_001655_060--Hb_001789_040 Hb_007575_050 Hb_007575_050 Hb_004954_070--Hb_007575_050 Hb_000011_230 Hb_000011_230 Hb_004954_070--Hb_000011_230 Hb_017862_020 Hb_017862_020 Hb_004954_070--Hb_017862_020 Hb_004410_030 Hb_004410_030 Hb_004954_070--Hb_004410_030 Hb_000225_040 Hb_000225_040 Hb_004954_070--Hb_000225_040 Hb_031284_040 Hb_031284_040 Hb_004954_070--Hb_031284_040 Hb_000900_030 Hb_000900_030 Hb_001062_010--Hb_000900_030 Hb_009976_020 Hb_009976_020 Hb_001062_010--Hb_009976_020 Hb_001343_040 Hb_001343_040 Hb_001062_010--Hb_001343_040 Hb_002311_290 Hb_002311_290 Hb_001062_010--Hb_002311_290 Hb_002815_030 Hb_002815_030 Hb_001062_010--Hb_002815_030 Hb_009175_020 Hb_009175_020 Hb_001062_010--Hb_009175_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.40827 5.74595 2.67168 2.30211 6.44508 6.6166
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.93879 5.46156 3.34204 7.98986 6.97493

CAGE analysis