Hb_001655_060

Information

Type -
Description -
Location Contig1655: 60686-70179
Sequence    

Annotation

kegg
ID rcu:RCOM_1448870
description RNA-binding protein, putative
nr
ID XP_012067208.1
description PREDICTED: RNA-binding protein 28 [Jatropha curcas]
swissprot
ID Q8CGC6
description RNA-binding protein 28 OS=Mus musculus GN=Rbm28 PE=1 SV=4
trembl
ID A0A067L3I2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26766 PE=4 SV=1
Gene Ontology
ID GO:0000166
description rna-binding protein 28

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15241: 60719-67407 , PASA_asmbl_15242: 67443-69863
cDNA
(Sanger)
(ID:Location)		 004_H14.ab1: 60719-64123 , 011_C04.ab1: 60719-64138

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001655_060 0.0 - - PREDICTED: RNA-binding protein 28 [Jatropha curcas]
2 Hb_005271_190 0.0828241522 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
3 Hb_000788_070 0.0829667997 - - PREDICTED: pentatricopeptide repeat-containing protein At1g10270 [Jatropha curcas]
4 Hb_188126_010 0.0842628569 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25-like isoform X3 [Jatropha curcas]
5 Hb_000740_100 0.0910068017 - - calpain, putative [Ricinus communis]
6 Hb_001062_010 0.0912841281 - - PREDICTED: CWF19-like protein 2 [Jatropha curcas]
7 Hb_001789_040 0.091769514 - - PREDICTED: uncharacterized protein LOC105648457 isoform X2 [Jatropha curcas]
8 Hb_001452_220 0.0933731302 - - PREDICTED: molybdopterin biosynthesis protein CNX1 [Jatropha curcas]
9 Hb_002422_050 0.0961524863 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 5 isoform X1 [Jatropha curcas]
10 Hb_002097_050 0.0969076392 - - PREDICTED: protein fluG isoform X1 [Jatropha curcas]
11 Hb_028487_010 0.0975253399 - - PREDICTED: mediator of RNA polymerase II transcription subunit 23 isoform X2 [Jatropha curcas]
12 Hb_000265_230 0.0999081264 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105643603 isoform X1 [Jatropha curcas]
13 Hb_002631_170 0.1010586032 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 36 [Jatropha curcas]
14 Hb_001623_480 0.101874208 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 13 [Jatropha curcas]
15 Hb_003739_030 0.1027123285 - - PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [Jatropha curcas]
16 Hb_011173_030 0.1030834929 - - pumilio, putative [Ricinus communis]
17 Hb_000025_710 0.1032677469 transcription factor TF Family: SNF2 Chromodomain-helicase-DNA-binding 2 [Gossypium arboreum]
18 Hb_002784_010 0.1051548136 - - DNA-directed RNA polymerase I subunit, putative [Ricinus communis]
19 Hb_009486_180 0.1059812713 - - unknown [Glycine max]
20 Hb_148909_030 0.1062945151 - - PREDICTED: uncharacterized protein LOC105638192 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001655_060 Hb_001655_060 Hb_005271_190 Hb_005271_190 Hb_001655_060--Hb_005271_190 Hb_000788_070 Hb_000788_070 Hb_001655_060--Hb_000788_070 Hb_188126_010 Hb_188126_010 Hb_001655_060--Hb_188126_010 Hb_000740_100 Hb_000740_100 Hb_001655_060--Hb_000740_100 Hb_001062_010 Hb_001062_010 Hb_001655_060--Hb_001062_010 Hb_001789_040 Hb_001789_040 Hb_001655_060--Hb_001789_040 Hb_000538_160 Hb_000538_160 Hb_005271_190--Hb_000538_160 Hb_006198_120 Hb_006198_120 Hb_005271_190--Hb_006198_120 Hb_003529_170 Hb_003529_170 Hb_005271_190--Hb_003529_170 Hb_004954_070 Hb_004954_070 Hb_005271_190--Hb_004954_070 Hb_005271_190--Hb_001062_010 Hb_002784_110 Hb_002784_110 Hb_000788_070--Hb_002784_110 Hb_005496_110 Hb_005496_110 Hb_000788_070--Hb_005496_110 Hb_000265_230 Hb_000265_230 Hb_000788_070--Hb_000265_230 Hb_000025_710 Hb_000025_710 Hb_000788_070--Hb_000025_710 Hb_000183_020 Hb_000183_020 Hb_000788_070--Hb_000183_020 Hb_028487_010 Hb_028487_010 Hb_000788_070--Hb_028487_010 Hb_000005_190 Hb_000005_190 Hb_188126_010--Hb_000005_190 Hb_188126_010--Hb_001062_010 Hb_000661_030 Hb_000661_030 Hb_188126_010--Hb_000661_030 Hb_007805_010 Hb_007805_010 Hb_188126_010--Hb_007805_010 Hb_009976_020 Hb_009976_020 Hb_188126_010--Hb_009976_020 Hb_002329_040 Hb_002329_040 Hb_000740_100--Hb_002329_040 Hb_000261_030 Hb_000261_030 Hb_000740_100--Hb_000261_030 Hb_000395_070 Hb_000395_070 Hb_000740_100--Hb_000395_070 Hb_008024_030 Hb_008024_030 Hb_000740_100--Hb_008024_030 Hb_011173_030 Hb_011173_030 Hb_000740_100--Hb_011173_030 Hb_104061_020 Hb_104061_020 Hb_000740_100--Hb_104061_020 Hb_000900_030 Hb_000900_030 Hb_001062_010--Hb_000900_030 Hb_001062_010--Hb_009976_020 Hb_001343_040 Hb_001343_040 Hb_001062_010--Hb_001343_040 Hb_002311_290 Hb_002311_290 Hb_001062_010--Hb_002311_290 Hb_002815_030 Hb_002815_030 Hb_001062_010--Hb_002815_030 Hb_009175_020 Hb_009175_020 Hb_001062_010--Hb_009175_020 Hb_000608_300 Hb_000608_300 Hb_001789_040--Hb_000608_300 Hb_005402_040 Hb_005402_040 Hb_001789_040--Hb_005402_040 Hb_004306_030 Hb_004306_030 Hb_001789_040--Hb_004306_030 Hb_027472_220 Hb_027472_220 Hb_001789_040--Hb_027472_220 Hb_001789_040--Hb_000025_710 Hb_002631_140 Hb_002631_140 Hb_001789_040--Hb_002631_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.0518 11.5957 6.18377 4.91436 14.4091 14.6046
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.44474 7.01024 4.06969 16.0863 14.5962

CAGE analysis