Hb_002675_110

Information

Type -
Description -
Location Contig2675: 91487-99313
Sequence    

Annotation

kegg
ID rcu:RCOM_0894640
description hypothetical protein
nr
ID XP_012073303.1
description PREDICTED: uncharacterized protein LOC105634948 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KZC3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06240 PE=4 SV=1
Gene Ontology
ID GO:0044238
description PREDICTED: uncharacterized protein LOC105634948

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27856: 95589-100297
cDNA
(Sanger)
(ID:Location)		 024_E06.ab1: 91667-92007 , 051_H19.ab1: 91526-91976

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002675_110 0.0 - - PREDICTED: uncharacterized protein LOC105634948 [Jatropha curcas]
2 Hb_184798_080 0.0818764361 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Jatropha curcas]
3 Hb_005918_010 0.0879229964 - - PREDICTED: protein ROOT HAIR DEFECTIVE 3-like [Jatropha curcas]
4 Hb_007811_050 0.0891250486 - - PREDICTED: probable serine/threonine-protein kinase NAK [Jatropha curcas]
5 Hb_002046_110 0.0923254914 - - PREDICTED: TBC1 domain family member 15 isoform X2 [Jatropha curcas]
6 Hb_001153_190 0.094448202 - - PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Jatropha curcas]
7 Hb_000684_510 0.094886763 - - run and tbc1 domain containing 3, plant, putative [Ricinus communis]
8 Hb_000402_150 0.0950845226 - - PREDICTED: uncharacterized protein LOC105644650 isoform X2 [Jatropha curcas]
9 Hb_001366_090 0.0957224651 transcription factor TF Family: NAC hypothetical protein RCOM_1341380 [Ricinus communis]
10 Hb_007062_030 0.0991614918 - - hypothetical protein VITISV_039033 [Vitis vinifera]
11 Hb_000086_500 0.0995439719 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
12 Hb_008160_030 0.0997274349 - - DNA binding protein, putative [Ricinus communis]
13 Hb_000352_260 0.1011452334 - - PREDICTED: WD repeat-containing protein LWD1 [Jatropha curcas]
14 Hb_004943_030 0.1029161518 - - PREDICTED: cation-chloride cotransporter 1 [Jatropha curcas]
15 Hb_000174_150 0.1039336452 - - stearoyl-acyl-carrier protein desaturase [Ricinus communis]
16 Hb_005137_040 0.1042582962 - - hypothetical protein JCGZ_12324 [Jatropha curcas]
17 Hb_077048_010 0.1050431436 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001878_050 0.1051968442 - - PREDICTED: uncharacterized protein LOC105646110 isoform X3 [Jatropha curcas]
19 Hb_009083_070 0.1053802255 - - PREDICTED: uncharacterized protein LOC105639870 [Jatropha curcas]
20 Hb_001584_350 0.1055307287 - - hypothetical protein JCGZ_23178 [Jatropha curcas]

Gene co-expression network

sample Hb_002675_110 Hb_002675_110 Hb_184798_080 Hb_184798_080 Hb_002675_110--Hb_184798_080 Hb_005918_010 Hb_005918_010 Hb_002675_110--Hb_005918_010 Hb_007811_050 Hb_007811_050 Hb_002675_110--Hb_007811_050 Hb_002046_110 Hb_002046_110 Hb_002675_110--Hb_002046_110 Hb_001153_190 Hb_001153_190 Hb_002675_110--Hb_001153_190 Hb_000684_510 Hb_000684_510 Hb_002675_110--Hb_000684_510 Hb_009083_070 Hb_009083_070 Hb_184798_080--Hb_009083_070 Hb_001147_110 Hb_001147_110 Hb_184798_080--Hb_001147_110 Hb_002325_040 Hb_002325_040 Hb_184798_080--Hb_002325_040 Hb_004129_070 Hb_004129_070 Hb_184798_080--Hb_004129_070 Hb_002276_240 Hb_002276_240 Hb_184798_080--Hb_002276_240 Hb_001135_120 Hb_001135_120 Hb_184798_080--Hb_001135_120 Hb_005137_040 Hb_005137_040 Hb_005918_010--Hb_005137_040 Hb_012506_030 Hb_012506_030 Hb_005918_010--Hb_012506_030 Hb_003544_060 Hb_003544_060 Hb_005918_010--Hb_003544_060 Hb_005918_010--Hb_001153_190 Hb_105105_010 Hb_105105_010 Hb_005918_010--Hb_105105_010 Hb_000441_220 Hb_000441_220 Hb_005918_010--Hb_000441_220 Hb_000649_110 Hb_000649_110 Hb_007811_050--Hb_000649_110 Hb_001221_110 Hb_001221_110 Hb_007811_050--Hb_001221_110 Hb_000402_150 Hb_000402_150 Hb_007811_050--Hb_000402_150 Hb_004586_300 Hb_004586_300 Hb_007811_050--Hb_004586_300 Hb_011360_050 Hb_011360_050 Hb_007811_050--Hb_011360_050 Hb_002046_110--Hb_009083_070 Hb_002046_110--Hb_002325_040 Hb_005306_160 Hb_005306_160 Hb_002046_110--Hb_005306_160 Hb_000928_220 Hb_000928_220 Hb_002046_110--Hb_000928_220 Hb_002046_110--Hb_001135_120 Hb_000076_160 Hb_000076_160 Hb_002046_110--Hb_000076_160 Hb_005000_190 Hb_005000_190 Hb_001153_190--Hb_005000_190 Hb_002805_190 Hb_002805_190 Hb_001153_190--Hb_002805_190 Hb_001981_030 Hb_001981_030 Hb_001153_190--Hb_001981_030 Hb_000162_030 Hb_000162_030 Hb_001153_190--Hb_000162_030 Hb_001153_190--Hb_002046_110 Hb_003711_010 Hb_003711_010 Hb_000684_510--Hb_003711_010 Hb_001723_010 Hb_001723_010 Hb_000684_510--Hb_001723_010 Hb_004517_020 Hb_004517_020 Hb_000684_510--Hb_004517_020 Hb_000684_510--Hb_000402_150 Hb_000373_170 Hb_000373_170 Hb_000684_510--Hb_000373_170 Hb_000085_170 Hb_000085_170 Hb_000684_510--Hb_000085_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.20672 10.7634 10.4902 7.94054 4.13525 7.77901
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.82734 3.88718 5.7917 9.12541 3.2617

CAGE analysis