Hb_005488_020

Information

Type -
Description -
Location Contig5488: 33398-36108
Sequence    

Annotation

kegg
ID rcu:RCOM_1517980
description hypothetical protein
nr
ID XP_012070267.1
description PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L632
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02574 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48106: 33737-36021
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005488_020 0.0 - - PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Jatropha curcas]
2 Hb_000869_020 0.0790353439 - - PREDICTED: uncharacterized protein LOC105641036 [Jatropha curcas]
3 Hb_000816_250 0.0843985914 - - PREDICTED: uncharacterized protein LOC105649197 isoform X1 [Jatropha curcas]
4 Hb_000140_290 0.0864534204 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 [Populus euphratica]
5 Hb_001584_140 0.0865376823 - - PREDICTED: uncharacterized protein LOC105647409 [Jatropha curcas]
6 Hb_023344_120 0.0878632193 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial [Jatropha curcas]
7 Hb_000637_150 0.0885691226 - - Protein CASP, putative [Ricinus communis]
8 Hb_005588_080 0.0902759845 - - PREDICTED: uncharacterized protein LOC105633661 [Jatropha curcas]
9 Hb_000699_030 0.0910934929 - - PREDICTED: serine/threonine-protein phosphatase PP1-like isoform X2 [Jatropha curcas]
10 Hb_000340_420 0.0939087983 - - PREDICTED: LEC14B protein isoform X2 [Jatropha curcas]
11 Hb_000313_220 0.094611287 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
12 Hb_004449_130 0.0967095551 - - PREDICTED: exportin-7 isoform X1 [Jatropha curcas]
13 Hb_000890_060 0.0970003615 - - PREDICTED: sucrose nonfermenting 4-like protein [Jatropha curcas]
14 Hb_003428_010 0.097515711 - - PREDICTED: probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 [Jatropha curcas]
15 Hb_002849_130 0.0992102253 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]
16 Hb_093458_040 0.0992147389 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
17 Hb_000392_420 0.0995216896 - - PREDICTED: probable aldehyde dehydrogenase isoform X1 [Jatropha curcas]
18 Hb_154471_020 0.0998099594 - - squalene synthetase [Euphorbia tirucalli]
19 Hb_000327_270 0.0998380637 - - PREDICTED: leukocyte receptor cluster member 8 homolog isoform X1 [Jatropha curcas]
20 Hb_021409_180 0.10046145 - - PREDICTED: glutamine-dependent NAD(+) synthetase [Jatropha curcas]

Gene co-expression network

sample Hb_005488_020 Hb_005488_020 Hb_000869_020 Hb_000869_020 Hb_005488_020--Hb_000869_020 Hb_000816_250 Hb_000816_250 Hb_005488_020--Hb_000816_250 Hb_000140_290 Hb_000140_290 Hb_005488_020--Hb_000140_290 Hb_001584_140 Hb_001584_140 Hb_005488_020--Hb_001584_140 Hb_023344_120 Hb_023344_120 Hb_005488_020--Hb_023344_120 Hb_000637_150 Hb_000637_150 Hb_005488_020--Hb_000637_150 Hb_003513_010 Hb_003513_010 Hb_000869_020--Hb_003513_010 Hb_004970_190 Hb_004970_190 Hb_000869_020--Hb_004970_190 Hb_004052_080 Hb_004052_080 Hb_000869_020--Hb_004052_080 Hb_003861_060 Hb_003861_060 Hb_000869_020--Hb_003861_060 Hb_007007_120 Hb_007007_120 Hb_000869_020--Hb_007007_120 Hb_005588_080 Hb_005588_080 Hb_000869_020--Hb_005588_080 Hb_014834_150 Hb_014834_150 Hb_000816_250--Hb_014834_150 Hb_000313_220 Hb_000313_220 Hb_000816_250--Hb_000313_220 Hb_002889_010 Hb_002889_010 Hb_000816_250--Hb_002889_010 Hb_005779_010 Hb_005779_010 Hb_000816_250--Hb_005779_010 Hb_001946_400 Hb_001946_400 Hb_000816_250--Hb_001946_400 Hb_000976_140 Hb_000976_140 Hb_000816_250--Hb_000976_140 Hb_005634_010 Hb_005634_010 Hb_000140_290--Hb_005634_010 Hb_010142_020 Hb_010142_020 Hb_000140_290--Hb_010142_020 Hb_000556_120 Hb_000556_120 Hb_000140_290--Hb_000556_120 Hb_001500_140 Hb_001500_140 Hb_000140_290--Hb_001500_140 Hb_093458_040 Hb_093458_040 Hb_000140_290--Hb_093458_040 Hb_013726_090 Hb_013726_090 Hb_000140_290--Hb_013726_090 Hb_001584_140--Hb_000637_150 Hb_000136_110 Hb_000136_110 Hb_001584_140--Hb_000136_110 Hb_001205_250 Hb_001205_250 Hb_001584_140--Hb_001205_250 Hb_000441_220 Hb_000441_220 Hb_001584_140--Hb_000441_220 Hb_001205_120 Hb_001205_120 Hb_001584_140--Hb_001205_120 Hb_001518_080 Hb_001518_080 Hb_001584_140--Hb_001518_080 Hb_006634_070 Hb_006634_070 Hb_023344_120--Hb_006634_070 Hb_000676_250 Hb_000676_250 Hb_023344_120--Hb_000676_250 Hb_006455_120 Hb_006455_120 Hb_023344_120--Hb_006455_120 Hb_027380_130 Hb_027380_130 Hb_023344_120--Hb_027380_130 Hb_011995_010 Hb_011995_010 Hb_023344_120--Hb_011995_010 Hb_005269_070 Hb_005269_070 Hb_023344_120--Hb_005269_070 Hb_001789_030 Hb_001789_030 Hb_000637_150--Hb_001789_030 Hb_000637_150--Hb_001205_250 Hb_000637_150--Hb_001518_080 Hb_000008_290 Hb_000008_290 Hb_000637_150--Hb_000008_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.30378 4.18186 6.08152 6.00683 3.82782 4.08
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.05373 4.5016 5.42207 5.44988 6.13465

CAGE analysis