Hb_006502_060

Information

Type -
Description -
Location Contig6502: 39533-45909
Sequence    

Annotation

kegg
ID rcu:RCOM_1412330
description hypothetical protein
nr
ID XP_002528624.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SRK5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1412330 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52557: 39565-45907 , PASA_asmbl_52558: 39796-39915 , PASA_asmbl_52560: 41972-42378 , PASA_asmbl_52561: 42851-43218
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006502_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001246_110 0.0986816089 - - PREDICTED: probable purine permease 11 [Jatropha curcas]
3 Hb_000869_080 0.0989447198 - - PREDICTED: uncharacterized protein LOC105641084 isoform X2 [Jatropha curcas]
4 Hb_000522_150 0.1016851985 - - PREDICTED: uncharacterized protein LOC105646670 [Jatropha curcas]
5 Hb_000164_020 0.1087086205 - - actin binding protein, putative [Ricinus communis]
6 Hb_001766_060 0.112001957 - - conserved hypothetical protein [Ricinus communis]
7 Hb_059480_010 0.1126575892 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
8 Hb_005162_090 0.11574777 - - PREDICTED: uncharacterized protein LOC105648425 [Jatropha curcas]
9 Hb_000161_130 0.1172280834 - - PREDICTED: nifU-like protein 2, chloroplastic [Jatropha curcas]
10 Hb_000729_030 0.118519615 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
11 Hb_000731_170 0.1186756165 - - PREDICTED: phospholipase A I [Jatropha curcas]
12 Hb_028697_010 0.1212052601 - - PREDICTED: protein yippee-like At4g27745 [Jatropha curcas]
13 Hb_139294_010 0.1227010395 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_000738_020 0.1231828557 - - zinc finger protein, putative [Ricinus communis]
15 Hb_000028_370 0.1234963388 - - Guanine nucleotide-binding protein alpha-2 subunit [Glycine soja]
16 Hb_008226_060 0.1254237246 - - PREDICTED: folic acid synthesis protein fol1-like [Jatropha curcas]
17 Hb_003151_040 0.1268145663 transcription factor TF Family: Alfin-like zinc finger family protein [Populus trichocarpa]
18 Hb_003747_100 0.1276108979 - - PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Jatropha curcas]
19 Hb_000221_190 0.1282306711 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
20 Hb_000789_060 0.1290806318 - - PREDICTED: mitogen-activated protein kinase kinase 6 [Jatropha curcas]

Gene co-expression network

sample Hb_006502_060 Hb_006502_060 Hb_001246_110 Hb_001246_110 Hb_006502_060--Hb_001246_110 Hb_000869_080 Hb_000869_080 Hb_006502_060--Hb_000869_080 Hb_000522_150 Hb_000522_150 Hb_006502_060--Hb_000522_150 Hb_000164_020 Hb_000164_020 Hb_006502_060--Hb_000164_020 Hb_001766_060 Hb_001766_060 Hb_006502_060--Hb_001766_060 Hb_059480_010 Hb_059480_010 Hb_006502_060--Hb_059480_010 Hb_001246_110--Hb_000164_020 Hb_001246_110--Hb_001766_060 Hb_000729_030 Hb_000729_030 Hb_001246_110--Hb_000729_030 Hb_001246_110--Hb_000869_080 Hb_012019_010 Hb_012019_010 Hb_001246_110--Hb_012019_010 Hb_000342_060 Hb_000342_060 Hb_001246_110--Hb_000342_060 Hb_000869_080--Hb_000729_030 Hb_164010_040 Hb_164010_040 Hb_000869_080--Hb_164010_040 Hb_013358_040 Hb_013358_040 Hb_000869_080--Hb_013358_040 Hb_000738_020 Hb_000738_020 Hb_000869_080--Hb_000738_020 Hb_005162_090 Hb_005162_090 Hb_000869_080--Hb_005162_090 Hb_002073_200 Hb_002073_200 Hb_000869_080--Hb_002073_200 Hb_000522_150--Hb_000738_020 Hb_000522_150--Hb_000869_080 Hb_002205_110 Hb_002205_110 Hb_000522_150--Hb_002205_110 Hb_005271_220 Hb_005271_220 Hb_000522_150--Hb_005271_220 Hb_024958_010 Hb_024958_010 Hb_000522_150--Hb_024958_010 Hb_000010_110 Hb_000010_110 Hb_000522_150--Hb_000010_110 Hb_000164_020--Hb_000342_060 Hb_000164_020--Hb_000869_080 Hb_004208_030 Hb_004208_030 Hb_000164_020--Hb_004208_030 Hb_000164_020--Hb_001766_060 Hb_002217_020 Hb_002217_020 Hb_000164_020--Hb_002217_020 Hb_001245_100 Hb_001245_100 Hb_001766_060--Hb_001245_100 Hb_003151_040 Hb_003151_040 Hb_001766_060--Hb_003151_040 Hb_005846_040 Hb_005846_040 Hb_001766_060--Hb_005846_040 Hb_027380_050 Hb_027380_050 Hb_001766_060--Hb_027380_050 Hb_001766_060--Hb_012019_010 Hb_084247_010 Hb_084247_010 Hb_059480_010--Hb_084247_010 Hb_059480_010--Hb_000522_150 Hb_002445_060 Hb_002445_060 Hb_059480_010--Hb_002445_060 Hb_003929_170 Hb_003929_170 Hb_059480_010--Hb_003929_170 Hb_000107_230 Hb_000107_230 Hb_059480_010--Hb_000107_230 Hb_004052_040 Hb_004052_040 Hb_059480_010--Hb_004052_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
45.122 44.1149 27.783 40.7643 9.7921 30.8087
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.0439 52.3183 26.6372 19.151 32.2907

CAGE analysis