Hb_000883_170

Information

Type -
Description -
Location Contig883: 218411-219877
Sequence    

Annotation

kegg
ID pop:POPTR_0003s03400g
description senescence-associated family protein
nr
ID XP_006385394.1
description senescence-associated family protein [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9MTW2
description Senescence-associated family protein OS=Populus trichocarpa GN=POPTR_0003s03400g PE=4 SV=1
Gene Ontology
ID GO:0003824
description senescence-associated family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61465: 218423-219905
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000883_170 0.0 - - senescence-associated family protein [Populus trichocarpa]
2 Hb_005144_210 0.1288280946 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001369_470 0.1390535257 - - PREDICTED: monocopper oxidase-like protein SKS1 [Jatropha curcas]
4 Hb_000098_030 0.1489594557 - - MLO-like protein 4 [Gossypium arboreum]
5 Hb_000098_150 0.1549270734 - - DNA helicase hus2, putative [Ricinus communis]
6 Hb_001863_160 0.1564948979 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
7 Hb_003050_260 0.1608930603 - - DNA replication licensing factor MCM3, putative [Ricinus communis]
8 Hb_009571_010 0.1609672289 - - early-responsive to dehydration family protein [Populus trichocarpa]
9 Hb_004108_210 0.1622953493 - - phenazine biosynthesis protein, putative [Ricinus communis]
10 Hb_143813_020 0.1627866913 transcription factor TF Family: WRKY hypothetical protein POPTR_0006s10950g [Populus trichocarpa]
11 Hb_000030_160 0.1650769984 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 7-like [Jatropha curcas]
12 Hb_010812_070 0.1686584935 - - PREDICTED: LOW QUALITY PROTEIN: protein NETWORKED 4A [Jatropha curcas]
13 Hb_156635_020 0.1702744307 - - PREDICTED: L-lactate dehydrogenase B [Jatropha curcas]
14 Hb_005903_020 0.17325244 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
15 Hb_001584_260 0.1739960396 - - zinc finger protein, putative [Ricinus communis]
16 Hb_001221_580 0.1745829522 - - PREDICTED: recQ-mediated genome instability protein 1 [Jatropha curcas]
17 Hb_001633_090 0.1749206933 - - PREDICTED: mitochondrial phosphate carrier protein 3, mitochondrial [Jatropha curcas]
18 Hb_004712_190 0.1754512598 - - PREDICTED: uncharacterized protein LOC105633105 [Jatropha curcas]
19 Hb_069591_010 0.1757032694 - - -
20 Hb_014231_020 0.1763063865 - - PREDICTED: ras-related protein Rab11D [Jatropha curcas]

Gene co-expression network

sample Hb_000883_170 Hb_000883_170 Hb_005144_210 Hb_005144_210 Hb_000883_170--Hb_005144_210 Hb_001369_470 Hb_001369_470 Hb_000883_170--Hb_001369_470 Hb_000098_030 Hb_000098_030 Hb_000883_170--Hb_000098_030 Hb_000098_150 Hb_000098_150 Hb_000883_170--Hb_000098_150 Hb_001863_160 Hb_001863_160 Hb_000883_170--Hb_001863_160 Hb_003050_260 Hb_003050_260 Hb_000883_170--Hb_003050_260 Hb_004712_190 Hb_004712_190 Hb_005144_210--Hb_004712_190 Hb_004108_210 Hb_004108_210 Hb_005144_210--Hb_004108_210 Hb_000703_160 Hb_000703_160 Hb_005144_210--Hb_000703_160 Hb_005144_210--Hb_001369_470 Hb_014231_020 Hb_014231_020 Hb_005144_210--Hb_014231_020 Hb_005144_210--Hb_000098_150 Hb_001369_470--Hb_004108_210 Hb_001369_470--Hb_000098_150 Hb_001221_580 Hb_001221_580 Hb_001369_470--Hb_001221_580 Hb_161568_010 Hb_161568_010 Hb_001369_470--Hb_161568_010 Hb_005903_020 Hb_005903_020 Hb_001369_470--Hb_005903_020 Hb_005725_230 Hb_005725_230 Hb_000098_030--Hb_005725_230 Hb_000296_010 Hb_000296_010 Hb_000098_030--Hb_000296_010 Hb_000098_030--Hb_003050_260 Hb_005539_340 Hb_005539_340 Hb_000098_030--Hb_005539_340 Hb_000098_030--Hb_005144_210 Hb_000098_150--Hb_004108_210 Hb_000098_150--Hb_001863_160 Hb_000098_150--Hb_001221_580 Hb_000098_150--Hb_004712_190 Hb_000098_150--Hb_014231_020 Hb_001863_160--Hb_014231_020 Hb_001863_160--Hb_005144_210 Hb_001863_160--Hb_004712_190 Hb_007741_130 Hb_007741_130 Hb_001863_160--Hb_007741_130 Hb_001191_080 Hb_001191_080 Hb_001863_160--Hb_001191_080 Hb_010812_070 Hb_010812_070 Hb_003050_260--Hb_010812_070 Hb_039021_010 Hb_039021_010 Hb_003050_260--Hb_039021_010 Hb_003050_260--Hb_005144_210 Hb_001268_340 Hb_001268_340 Hb_003050_260--Hb_001268_340 Hb_002837_050 Hb_002837_050 Hb_003050_260--Hb_002837_050 Hb_005754_040 Hb_005754_040 Hb_003050_260--Hb_005754_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
45.5124 41.5202 109.515 70.4143 18.7033 5.18372
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.5193 19.4342 33.184 55.2349 12.0742

CAGE analysis