Hb_003050_260

Information

Type -
Description -
Location Contig3050: 208989-215214
Sequence    

Annotation

kegg
ID rcu:RCOM_0633290
description DNA replication licensing factor MCM3, putative
nr
ID XP_002519706.1
description DNA replication licensing factor MCM3, putative [Ricinus communis]
swissprot
ID Q9FL33
description DNA replication licensing factor MCM3 OS=Arabidopsis thaliana GN=MCM3 PE=1 SV=1
trembl
ID B9S137
description DNA helicase OS=Ricinus communis GN=RCOM_0633290 PE=3 SV=1
Gene Ontology
ID GO:0005634
description dna replication licensing factor mcm3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32157: 209442-214897 , PASA_asmbl_32158: 215783-221249
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003050_260 0.0 - - DNA replication licensing factor MCM3, putative [Ricinus communis]
2 Hb_010812_070 0.1049148053 - - PREDICTED: LOW QUALITY PROTEIN: protein NETWORKED 4A [Jatropha curcas]
3 Hb_039021_010 0.115983008 transcription factor TF Family: B3 hypothetical protein RCOM_0465210 [Ricinus communis]
4 Hb_005144_210 0.1319671453 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001268_340 0.1348864789 - - Actin, putative [Ricinus communis]
6 Hb_002837_050 0.1423886919 - - hypothetical protein POPTR_0006s00550g [Populus trichocarpa]
7 Hb_005754_040 0.1429847837 - - PREDICTED: uncharacterized protein LOC105636678 isoform X2 [Jatropha curcas]
8 Hb_000580_100 0.1461998685 - - PREDICTED: uncharacterized protein LOC105643133 isoform X1 [Jatropha curcas]
9 Hb_001195_640 0.1468698431 - - PREDICTED: uncharacterized protein LOC105633747 [Jatropha curcas]
10 Hb_000098_030 0.1474952311 - - MLO-like protein 4 [Gossypium arboreum]
11 Hb_027746_020 0.1475778466 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit B [Jatropha curcas]
12 Hb_003540_050 0.1476813829 - - PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X4 [Jatropha curcas]
13 Hb_000940_210 0.149896161 - - cyclophilin [Hevea brasiliensis]
14 Hb_002686_080 0.151947376 transcription factor TF Family: PHD PREDICTED: PHD finger protein ING2-like [Jatropha curcas]
15 Hb_011716_010 0.1530961169 - - PREDICTED: probable protein arginine N-methyltransferase 1.2 [Jatropha curcas]
16 Hb_000000_330 0.1589420552 - - PREDICTED: uncharacterized protein LOC105633747 [Jatropha curcas]
17 Hb_004117_190 0.1600219495 - - PREDICTED: uncharacterized protein LOC105649109 [Jatropha curcas]
18 Hb_021495_010 0.1602315059 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001584_260 0.1604494874 - - zinc finger protein, putative [Ricinus communis]
20 Hb_004108_210 0.1608432559 - - phenazine biosynthesis protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003050_260 Hb_003050_260 Hb_010812_070 Hb_010812_070 Hb_003050_260--Hb_010812_070 Hb_039021_010 Hb_039021_010 Hb_003050_260--Hb_039021_010 Hb_005144_210 Hb_005144_210 Hb_003050_260--Hb_005144_210 Hb_001268_340 Hb_001268_340 Hb_003050_260--Hb_001268_340 Hb_002837_050 Hb_002837_050 Hb_003050_260--Hb_002837_050 Hb_005754_040 Hb_005754_040 Hb_003050_260--Hb_005754_040 Hb_001195_640 Hb_001195_640 Hb_010812_070--Hb_001195_640 Hb_003001_090 Hb_003001_090 Hb_010812_070--Hb_003001_090 Hb_000987_040 Hb_000987_040 Hb_010812_070--Hb_000987_040 Hb_000331_140 Hb_000331_140 Hb_010812_070--Hb_000331_140 Hb_000369_010 Hb_000369_010 Hb_010812_070--Hb_000369_010 Hb_000580_100 Hb_000580_100 Hb_039021_010--Hb_000580_100 Hb_039021_010--Hb_005144_210 Hb_000836_300 Hb_000836_300 Hb_039021_010--Hb_000836_300 Hb_004079_130 Hb_004079_130 Hb_039021_010--Hb_004079_130 Hb_000617_310 Hb_000617_310 Hb_039021_010--Hb_000617_310 Hb_004712_190 Hb_004712_190 Hb_005144_210--Hb_004712_190 Hb_004108_210 Hb_004108_210 Hb_005144_210--Hb_004108_210 Hb_000703_160 Hb_000703_160 Hb_005144_210--Hb_000703_160 Hb_001369_470 Hb_001369_470 Hb_005144_210--Hb_001369_470 Hb_014231_020 Hb_014231_020 Hb_005144_210--Hb_014231_020 Hb_000098_150 Hb_000098_150 Hb_005144_210--Hb_000098_150 Hb_000656_300 Hb_000656_300 Hb_001268_340--Hb_000656_300 Hb_003540_050 Hb_003540_050 Hb_001268_340--Hb_003540_050 Hb_001268_340--Hb_001195_640 Hb_004032_160 Hb_004032_160 Hb_001268_340--Hb_004032_160 Hb_000072_300 Hb_000072_300 Hb_001268_340--Hb_000072_300 Hb_004117_190 Hb_004117_190 Hb_001268_340--Hb_004117_190 Hb_001396_210 Hb_001396_210 Hb_002837_050--Hb_001396_210 Hb_002837_050--Hb_004117_190 Hb_000684_120 Hb_000684_120 Hb_002837_050--Hb_000684_120 Hb_002837_050--Hb_001195_640 Hb_000950_070 Hb_000950_070 Hb_002837_050--Hb_000950_070 Hb_000395_280 Hb_000395_280 Hb_005754_040--Hb_000395_280 Hb_003605_020 Hb_003605_020 Hb_005754_040--Hb_003605_020 Hb_002676_120 Hb_002676_120 Hb_005754_040--Hb_002676_120 Hb_006775_120 Hb_006775_120 Hb_005754_040--Hb_006775_120 Hb_005754_040--Hb_000072_300 Hb_000684_030 Hb_000684_030 Hb_005754_040--Hb_000684_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.83539 0.835234 4.59972 3.66046 0.880955 0.65816
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.22568 1.20832 0.487164 2.50878 0.747204

CAGE analysis