Hb_000987_040

Information

Type -
Description -
Location Contig987: 12884-21838
Sequence    

Annotation

kegg
ID rcu:RCOM_0847980
description breast cancer type 2 susceptibility protein brca2, putative
nr
ID XP_012089779.1
description PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 2 homolog B isoform X2 [Jatropha curcas]
swissprot
ID Q7Y1C4
description Protein BREAST CANCER SUSCEPTIBILITY 2 homolog B OS=Arabidopsis thaliana GN=BRCA2B PE=1 SV=1
trembl
ID A0A067JS55
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00417 PE=4 SV=1
Gene Ontology
ID GO:0000724
description protein breast cancer susceptibility 2 homolog b isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64659: 15593-16219 , PASA_asmbl_64660: 20446-21698
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000987_040 0.0 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 2 homolog B isoform X2 [Jatropha curcas]
2 Hb_002676_120 0.0666091161 - - hypothetical protein POPTR_0002s23750g [Populus trichocarpa]
3 Hb_005333_060 0.0902330035 - - PREDICTED: uncharacterized protein LOC105630688 [Jatropha curcas]
4 Hb_002783_220 0.1147220529 - - PREDICTED: uncharacterized protein LOC105635342 isoform X1 [Jatropha curcas]
5 Hb_005754_040 0.1157644118 - - PREDICTED: uncharacterized protein LOC105636678 isoform X2 [Jatropha curcas]
6 Hb_001633_200 0.1162366966 - - hypothetical protein B456_005G137400 [Gossypium raimondii]
7 Hb_004125_010 0.1170042928 - - PREDICTED: uncharacterized protein LOC105632163 [Jatropha curcas]
8 Hb_000395_280 0.1179232334 - - PREDICTED: thioredoxin-related transmembrane protein 2 [Vitis vinifera]
9 Hb_000300_600 0.1183425629 - - tubulin alpha chain, putative [Ricinus communis]
10 Hb_007638_020 0.1200050595 - - PREDICTED: low-temperature-induced cysteine proteinase-like [Jatropha curcas]
11 Hb_000739_240 0.1220698903 - - PREDICTED: armadillo repeat-containing kinesin-like protein 2 isoform X1 [Jatropha curcas]
12 Hb_004586_150 0.1252978119 - - PREDICTED: uncharacterized protein LOC105630688 [Jatropha curcas]
13 Hb_000890_130 0.1280505766 - - PREDICTED: probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 [Phoenix dactylifera]
14 Hb_009193_090 0.1286288309 - - PREDICTED: protein root UVB sensitive 3 isoform X1 [Jatropha curcas]
15 Hb_004228_120 0.1289168449 - - hypothetical protein POPTR_0013s02080g [Populus trichocarpa]
16 Hb_002028_190 0.1305480056 - - PREDICTED: 26S protease regulatory subunit 7-like [Jatropha curcas]
17 Hb_010407_140 0.1332968318 - - PREDICTED: malate dehydrogenase [Jatropha curcas]
18 Hb_006775_120 0.1343543407 - - exonuclease-like protein [Oryza sativa Japonica Group]
19 Hb_000765_060 0.1344259141 - - Alcohol dehydrogenase-like 6 [Glycine soja]
20 Hb_010812_070 0.1344750939 - - PREDICTED: LOW QUALITY PROTEIN: protein NETWORKED 4A [Jatropha curcas]

Gene co-expression network

sample Hb_000987_040 Hb_000987_040 Hb_002676_120 Hb_002676_120 Hb_000987_040--Hb_002676_120 Hb_005333_060 Hb_005333_060 Hb_000987_040--Hb_005333_060 Hb_002783_220 Hb_002783_220 Hb_000987_040--Hb_002783_220 Hb_005754_040 Hb_005754_040 Hb_000987_040--Hb_005754_040 Hb_001633_200 Hb_001633_200 Hb_000987_040--Hb_001633_200 Hb_004125_010 Hb_004125_010 Hb_000987_040--Hb_004125_010 Hb_009193_090 Hb_009193_090 Hb_002676_120--Hb_009193_090 Hb_006570_160 Hb_006570_160 Hb_002676_120--Hb_006570_160 Hb_000395_280 Hb_000395_280 Hb_002676_120--Hb_000395_280 Hb_002676_120--Hb_005754_040 Hb_002676_120--Hb_005333_060 Hb_000739_240 Hb_000739_240 Hb_005333_060--Hb_000739_240 Hb_005333_060--Hb_002783_220 Hb_094121_010 Hb_094121_010 Hb_005333_060--Hb_094121_010 Hb_006775_120 Hb_006775_120 Hb_005333_060--Hb_006775_120 Hb_002783_220--Hb_006775_120 Hb_000364_170 Hb_000364_170 Hb_002783_220--Hb_000364_170 Hb_000000_330 Hb_000000_330 Hb_002783_220--Hb_000000_330 Hb_019654_050 Hb_019654_050 Hb_002783_220--Hb_019654_050 Hb_005754_040--Hb_000395_280 Hb_003605_020 Hb_003605_020 Hb_005754_040--Hb_003605_020 Hb_005754_040--Hb_006775_120 Hb_000072_300 Hb_000072_300 Hb_005754_040--Hb_000072_300 Hb_000684_030 Hb_000684_030 Hb_005754_040--Hb_000684_030 Hb_001507_120 Hb_001507_120 Hb_001633_200--Hb_001507_120 Hb_000705_230 Hb_000705_230 Hb_001633_200--Hb_000705_230 Hb_001633_200--Hb_000395_280 Hb_000197_020 Hb_000197_020 Hb_001633_200--Hb_000197_020 Hb_010672_020 Hb_010672_020 Hb_001633_200--Hb_010672_020 Hb_003777_200 Hb_003777_200 Hb_001633_200--Hb_003777_200 Hb_000035_080 Hb_000035_080 Hb_004125_010--Hb_000035_080 Hb_004125_010--Hb_002783_220 Hb_004125_010--Hb_000000_330 Hb_002028_190 Hb_002028_190 Hb_004125_010--Hb_002028_190 Hb_000656_160 Hb_000656_160 Hb_004125_010--Hb_000656_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.280282 0.0695021 0.651547 0.57657 0.182524 0.208754
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.130037 0.158152 0.28557 0.372295 0.219038

CAGE analysis