Hb_009193_090

Information

Type -
Description -
Location Contig9193: 74893-79413
Sequence    

Annotation

kegg
ID pop:POPTR_0008s09520g
description POPTRDRAFT_820518; hypothetical protein
nr
ID XP_012067773.1
description PREDICTED: protein root UVB sensitive 3 isoform X1 [Jatropha curcas]
swissprot
ID Q84JB8
description Protein root UVB sensitive 3 OS=Arabidopsis thaliana GN=RUS3 PE=2 SV=1
trembl
ID B9HIE3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s09520g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62333: 72935-78675 , PASA_asmbl_62334: 74983-78675 , PASA_asmbl_62335: 73158-79400 , PASA_asmbl_62336: 76649-78675
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009193_090 0.0 - - PREDICTED: protein root UVB sensitive 3 isoform X1 [Jatropha curcas]
2 Hb_007545_120 0.0701703946 - - NADH:cytochrome b5 reductase [Vernicia fordii]
3 Hb_001633_080 0.0751893715 - - PREDICTED: V-type proton ATPase subunit C [Gossypium raimondii]
4 Hb_002676_120 0.0820772251 - - hypothetical protein POPTR_0002s23750g [Populus trichocarpa]
5 Hb_002686_200 0.1033284633 - - glucosidase II beta subunit, putative [Ricinus communis]
6 Hb_159809_070 0.1050662081 - - phospholipase A-2-activating protein, putative [Ricinus communis]
7 Hb_006570_160 0.1057597091 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
8 Hb_010407_140 0.1067943838 - - PREDICTED: malate dehydrogenase [Jatropha curcas]
9 Hb_011282_060 0.107189765 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase 1 [Jatropha curcas]
10 Hb_000352_300 0.1086450701 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Jatropha curcas]
11 Hb_000963_040 0.1089430598 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
12 Hb_000703_330 0.109825897 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000260_470 0.1118064831 - - PREDICTED: uncharacterized protein LOC105649044 [Jatropha curcas]
14 Hb_133004_010 0.1119007234 - - PREDICTED: cyclin-D3-3 [Jatropha curcas]
15 Hb_004228_120 0.1124058765 - - hypothetical protein POPTR_0013s02080g [Populus trichocarpa]
16 Hb_001660_100 0.1129544284 - - PREDICTED: glyoxylate reductase/hydroxypyruvate reductase [Jatropha curcas]
17 Hb_000600_060 0.1131193464 - - PREDICTED: uncharacterized protein LOC105633515 isoform X1 [Jatropha curcas]
18 Hb_001957_010 0.1134643472 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g14410 isoform X1 [Jatropha curcas]
19 Hb_001104_230 0.1136877547 - - PREDICTED: fructose-bisphosphate aldolase cytoplasmic isozyme [Jatropha curcas]
20 Hb_001703_050 0.1148892713 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_009193_090 Hb_009193_090 Hb_007545_120 Hb_007545_120 Hb_009193_090--Hb_007545_120 Hb_001633_080 Hb_001633_080 Hb_009193_090--Hb_001633_080 Hb_002676_120 Hb_002676_120 Hb_009193_090--Hb_002676_120 Hb_002686_200 Hb_002686_200 Hb_009193_090--Hb_002686_200 Hb_159809_070 Hb_159809_070 Hb_009193_090--Hb_159809_070 Hb_006570_160 Hb_006570_160 Hb_009193_090--Hb_006570_160 Hb_001660_100 Hb_001660_100 Hb_007545_120--Hb_001660_100 Hb_001104_230 Hb_001104_230 Hb_007545_120--Hb_001104_230 Hb_001104_100 Hb_001104_100 Hb_007545_120--Hb_001104_100 Hb_002217_350 Hb_002217_350 Hb_007545_120--Hb_002217_350 Hb_007545_120--Hb_001633_080 Hb_003998_040 Hb_003998_040 Hb_001633_080--Hb_003998_040 Hb_010407_140 Hb_010407_140 Hb_001633_080--Hb_010407_140 Hb_003988_050 Hb_003988_050 Hb_001633_080--Hb_003988_050 Hb_001957_010 Hb_001957_010 Hb_001633_080--Hb_001957_010 Hb_062537_010 Hb_062537_010 Hb_001633_080--Hb_062537_010 Hb_000987_040 Hb_000987_040 Hb_002676_120--Hb_000987_040 Hb_002676_120--Hb_006570_160 Hb_000395_280 Hb_000395_280 Hb_002676_120--Hb_000395_280 Hb_005754_040 Hb_005754_040 Hb_002676_120--Hb_005754_040 Hb_005333_060 Hb_005333_060 Hb_002676_120--Hb_005333_060 Hb_065968_010 Hb_065968_010 Hb_002686_200--Hb_065968_010 Hb_002686_200--Hb_159809_070 Hb_001269_600 Hb_001269_600 Hb_002686_200--Hb_001269_600 Hb_003159_050 Hb_003159_050 Hb_002686_200--Hb_003159_050 Hb_007933_040 Hb_007933_040 Hb_002686_200--Hb_007933_040 Hb_006824_010 Hb_006824_010 Hb_002686_200--Hb_006824_010 Hb_001227_120 Hb_001227_120 Hb_159809_070--Hb_001227_120 Hb_000078_140 Hb_000078_140 Hb_159809_070--Hb_000078_140 Hb_079526_040 Hb_079526_040 Hb_159809_070--Hb_079526_040 Hb_159809_070--Hb_065968_010 Hb_006189_020 Hb_006189_020 Hb_159809_070--Hb_006189_020 Hb_008304_020 Hb_008304_020 Hb_159809_070--Hb_008304_020 Hb_000260_470 Hb_000260_470 Hb_006570_160--Hb_000260_470 Hb_011282_060 Hb_011282_060 Hb_006570_160--Hb_011282_060 Hb_005271_040 Hb_005271_040 Hb_006570_160--Hb_005271_040 Hb_006570_160--Hb_010407_140 Hb_000666_100 Hb_000666_100 Hb_006570_160--Hb_000666_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.89434 1.24399 4.04962 5.25759 1.94496 1.97752
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.83488 1.86824 2.08355 5.21163 1.83003

CAGE analysis