Hb_005333_060

Information

Type -
Description -
Location Contig5333: 38129-57796
Sequence    

Annotation

kegg
ID pop:POPTR_0002s10430g
description POPTRDRAFT_551641; hypothetical protein
nr
ID XP_012067971.1
description PREDICTED: uncharacterized protein LOC105630688 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KZ56
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15869 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47465: 48322-48652 , PASA_asmbl_47466: 52920-53516
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005333_060 0.0 - - PREDICTED: uncharacterized protein LOC105630688 [Jatropha curcas]
2 Hb_000987_040 0.0902330035 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 2 homolog B isoform X2 [Jatropha curcas]
3 Hb_002676_120 0.0974537619 - - hypothetical protein POPTR_0002s23750g [Populus trichocarpa]
4 Hb_000739_240 0.1013104738 - - PREDICTED: armadillo repeat-containing kinesin-like protein 2 isoform X1 [Jatropha curcas]
5 Hb_002783_220 0.1112489684 - - PREDICTED: uncharacterized protein LOC105635342 isoform X1 [Jatropha curcas]
6 Hb_094121_010 0.1130277044 - - -
7 Hb_006775_120 0.1180687482 - - exonuclease-like protein [Oryza sativa Japonica Group]
8 Hb_001102_070 0.1180794575 transcription factor TF Family: STAT conserved hypothetical protein [Ricinus communis]
9 Hb_001633_200 0.1186598922 - - hypothetical protein B456_005G137400 [Gossypium raimondii]
10 Hb_000890_130 0.1202923956 - - PREDICTED: probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 [Phoenix dactylifera]
11 Hb_002686_080 0.121615854 transcription factor TF Family: PHD PREDICTED: PHD finger protein ING2-like [Jatropha curcas]
12 Hb_000229_050 0.1219722301 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3-like [Jatropha curcas]
13 Hb_005754_040 0.1233495076 - - PREDICTED: uncharacterized protein LOC105636678 isoform X2 [Jatropha curcas]
14 Hb_000579_080 0.1253992393 - - PREDICTED: 26S protease regulatory subunit S10B homolog B [Jatropha curcas]
15 Hb_002687_120 0.1266509933 - - PREDICTED: lipoyl synthase, chloroplastic [Jatropha curcas]
16 Hb_000395_280 0.1273816982 - - PREDICTED: thioredoxin-related transmembrane protein 2 [Vitis vinifera]
17 Hb_004228_120 0.1283459227 - - hypothetical protein POPTR_0013s02080g [Populus trichocarpa]
18 Hb_004324_390 0.1285022966 - - PREDICTED: plastidial pyruvate kinase 2 [Jatropha curcas]
19 Hb_159809_070 0.1295094643 - - phospholipase A-2-activating protein, putative [Ricinus communis]
20 Hb_004125_010 0.1314010344 - - PREDICTED: uncharacterized protein LOC105632163 [Jatropha curcas]

Gene co-expression network

sample Hb_005333_060 Hb_005333_060 Hb_000987_040 Hb_000987_040 Hb_005333_060--Hb_000987_040 Hb_002676_120 Hb_002676_120 Hb_005333_060--Hb_002676_120 Hb_000739_240 Hb_000739_240 Hb_005333_060--Hb_000739_240 Hb_002783_220 Hb_002783_220 Hb_005333_060--Hb_002783_220 Hb_094121_010 Hb_094121_010 Hb_005333_060--Hb_094121_010 Hb_006775_120 Hb_006775_120 Hb_005333_060--Hb_006775_120 Hb_000987_040--Hb_002676_120 Hb_000987_040--Hb_002783_220 Hb_005754_040 Hb_005754_040 Hb_000987_040--Hb_005754_040 Hb_001633_200 Hb_001633_200 Hb_000987_040--Hb_001633_200 Hb_004125_010 Hb_004125_010 Hb_000987_040--Hb_004125_010 Hb_009193_090 Hb_009193_090 Hb_002676_120--Hb_009193_090 Hb_006570_160 Hb_006570_160 Hb_002676_120--Hb_006570_160 Hb_000395_280 Hb_000395_280 Hb_002676_120--Hb_000395_280 Hb_002676_120--Hb_005754_040 Hb_000579_080 Hb_000579_080 Hb_000739_240--Hb_000579_080 Hb_008206_080 Hb_008206_080 Hb_000739_240--Hb_008206_080 Hb_159809_070 Hb_159809_070 Hb_000739_240--Hb_159809_070 Hb_000229_050 Hb_000229_050 Hb_000739_240--Hb_000229_050 Hb_004228_120 Hb_004228_120 Hb_000739_240--Hb_004228_120 Hb_000724_020 Hb_000724_020 Hb_000739_240--Hb_000724_020 Hb_002783_220--Hb_006775_120 Hb_000364_170 Hb_000364_170 Hb_002783_220--Hb_000364_170 Hb_000000_330 Hb_000000_330 Hb_002783_220--Hb_000000_330 Hb_019654_050 Hb_019654_050 Hb_002783_220--Hb_019654_050 Hb_003430_050 Hb_003430_050 Hb_094121_010--Hb_003430_050 Hb_081599_010 Hb_081599_010 Hb_094121_010--Hb_081599_010 Hb_094121_010--Hb_001633_200 Hb_000072_300 Hb_000072_300 Hb_094121_010--Hb_000072_300 Hb_067130_010 Hb_067130_010 Hb_094121_010--Hb_067130_010 Hb_006775_120--Hb_000000_330 Hb_000926_060 Hb_000926_060 Hb_006775_120--Hb_000926_060 Hb_006775_120--Hb_005754_040 Hb_006775_120--Hb_000364_170 Hb_006775_120--Hb_000395_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.36529 0.683583 3.68429 2.07297 0.658389 1.22907
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.798262 0.84044 1.63052 2.00059 1.18255

CAGE analysis