Hb_067130_010

Information

Type -
Description -
Location Contig67130: 243-2356
Sequence    

Annotation

kegg
ID rcu:RCOM_0145120
description protein binding protein, putative
nr
ID XP_002533927.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T6Q8
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_0145120 PE=4 SV=1
Gene Ontology
ID GO:0008270
description zinc finger family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_067130_010 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_000331_090 0.0887886097 - - hypothetical protein PRUPE_ppa010923mg [Prunus persica]
3 Hb_000720_040 0.0995700927 - - PREDICTED: replication factor C subunit 2 [Jatropha curcas]
4 Hb_011282_060 0.1016612615 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase 1 [Jatropha curcas]
5 Hb_000916_070 0.1038147438 - - PREDICTED: sister chromatid cohesion protein DCC1-like [Jatropha curcas]
6 Hb_052805_010 0.1059415701 - - hypothetical protein POPTR_0009s03650g [Populus trichocarpa]
7 Hb_000107_230 0.1083270851 - - unknown [Medicago truncatula]
8 Hb_182782_010 0.1085706721 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_000300_500 0.1110218363 - - PREDICTED: uncharacterized protein LOC105632604 [Jatropha curcas]
10 Hb_094121_010 0.1121900898 - - -
11 Hb_000207_150 0.1157430656 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
12 Hb_001699_100 0.1158964533 - - PREDICTED: calmodulin-lysine N-methyltransferase [Jatropha curcas]
13 Hb_011628_060 0.116355721 - - Adenosine 3'-phospho 5'-phosphosulfate transporter, putative [Ricinus communis]
14 Hb_003528_030 0.1190861773 - - PREDICTED: eukaryotic translation initiation factor 3 subunit L-like [Jatropha curcas]
15 Hb_007831_010 0.119644439 - - PREDICTED: oligoribonuclease [Vitis vinifera]
16 Hb_000783_010 0.1218908899 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
17 Hb_001085_260 0.1223817442 - - PREDICTED: uncharacterized protein LOC105633184 [Jatropha curcas]
18 Hb_001227_130 0.1225017891 - - PREDICTED: delta(14)-sterol reductase [Jatropha curcas]
19 Hb_000453_160 0.1233209601 - - vacuolar protein sorting 26, vps26, putative [Ricinus communis]
20 Hb_172632_120 0.1240665722 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_067130_010 Hb_067130_010 Hb_000331_090 Hb_000331_090 Hb_067130_010--Hb_000331_090 Hb_000720_040 Hb_000720_040 Hb_067130_010--Hb_000720_040 Hb_011282_060 Hb_011282_060 Hb_067130_010--Hb_011282_060 Hb_000916_070 Hb_000916_070 Hb_067130_010--Hb_000916_070 Hb_052805_010 Hb_052805_010 Hb_067130_010--Hb_052805_010 Hb_000107_230 Hb_000107_230 Hb_067130_010--Hb_000107_230 Hb_000207_150 Hb_000207_150 Hb_000331_090--Hb_000207_150 Hb_001959_110 Hb_001959_110 Hb_000331_090--Hb_001959_110 Hb_163175_010 Hb_163175_010 Hb_000331_090--Hb_163175_010 Hb_001405_210 Hb_001405_210 Hb_000331_090--Hb_001405_210 Hb_000331_090--Hb_000720_040 Hb_000331_090--Hb_000107_230 Hb_000300_500 Hb_000300_500 Hb_000720_040--Hb_000300_500 Hb_003994_230 Hb_003994_230 Hb_000720_040--Hb_003994_230 Hb_000720_040--Hb_052805_010 Hb_002936_010 Hb_002936_010 Hb_000720_040--Hb_002936_010 Hb_000948_230 Hb_000948_230 Hb_000720_040--Hb_000948_230 Hb_000783_010 Hb_000783_010 Hb_000720_040--Hb_000783_010 Hb_011282_060--Hb_052805_010 Hb_006570_160 Hb_006570_160 Hb_011282_060--Hb_006570_160 Hb_003528_030 Hb_003528_030 Hb_011282_060--Hb_003528_030 Hb_001227_130 Hb_001227_130 Hb_011282_060--Hb_001227_130 Hb_001269_330 Hb_001269_330 Hb_011282_060--Hb_001269_330 Hb_010407_140 Hb_010407_140 Hb_011282_060--Hb_010407_140 Hb_002960_150 Hb_002960_150 Hb_000916_070--Hb_002960_150 Hb_000622_130 Hb_000622_130 Hb_000916_070--Hb_000622_130 Hb_124373_010 Hb_124373_010 Hb_000916_070--Hb_124373_010 Hb_010368_050 Hb_010368_050 Hb_000916_070--Hb_010368_050 Hb_003001_090 Hb_003001_090 Hb_000916_070--Hb_003001_090 Hb_001366_370 Hb_001366_370 Hb_052805_010--Hb_001366_370 Hb_000510_300 Hb_000510_300 Hb_052805_010--Hb_000510_300 Hb_000666_100 Hb_000666_100 Hb_052805_010--Hb_000666_100 Hb_052805_010--Hb_000783_010 Hb_000107_230--Hb_000207_150 Hb_004157_100 Hb_004157_100 Hb_000107_230--Hb_004157_100 Hb_007831_010 Hb_007831_010 Hb_000107_230--Hb_007831_010 Hb_006588_170 Hb_006588_170 Hb_000107_230--Hb_006588_170 Hb_000594_050 Hb_000594_050 Hb_000107_230--Hb_000594_050 Hb_003929_170 Hb_003929_170 Hb_000107_230--Hb_003929_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.4236 1.04946 2.97034 3.42253 1.01996 2.6403
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.11906 1.91885 1.81649 1.86948 0.927606

CAGE analysis