Hb_124373_010

Information

Type -
Description -
Location Contig124373: 150-1761
Sequence    

Annotation

kegg
ID rcu:RCOM_1598050
description Protein BRE, putative
nr
ID XP_012073790.1
description PREDICTED: BRCA1-A complex subunit BRE isoform X1 [Jatropha curcas]
swissprot
ID Q568D5
description BRCA1-A complex subunit BRE OS=Danio rerio GN=bre PE=2 SV=1
trembl
ID A0A067KLA8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08208 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_124373_010 0.0 - - PREDICTED: BRCA1-A complex subunit BRE isoform X1 [Jatropha curcas]
2 Hb_000130_270 0.089502312 - - PREDICTED: malate dehydrogenase, mitochondrial [Jatropha curcas]
3 Hb_000207_150 0.10200882 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
4 Hb_002960_150 0.1042251655 - - hypothetical protein CISIN_1g029215mg [Citrus sinensis]
5 Hb_003929_170 0.1049931112 - - PREDICTED: novel plant SNARE 13 [Jatropha curcas]
6 Hb_000152_600 0.1077340771 - - PREDICTED: protein jagunal homolog 1 [Jatropha curcas]
7 Hb_000916_070 0.109108029 - - PREDICTED: sister chromatid cohesion protein DCC1-like [Jatropha curcas]
8 Hb_000022_050 0.1140856612 - - PREDICTED: retinol dehydrogenase 11-like isoform X2 [Glycine max]
9 Hb_002311_380 0.114929272 - - PREDICTED: induced during hyphae development protein 1 [Jatropha curcas]
10 Hb_000086_170 0.1177767476 - - PREDICTED: serine/threonine-protein kinase 19 [Jatropha curcas]
11 Hb_000215_090 0.1179266217 - - cytochrome b5 domain-containing family protein [Populus trichocarpa]
12 Hb_005535_080 0.1184764609 - - hypothetical protein CICLE_v10012766mg [Citrus clementina]
13 Hb_001825_040 0.1192422616 - - myosin XI, putative [Ricinus communis]
14 Hb_000331_090 0.1196408316 - - hypothetical protein PRUPE_ppa010923mg [Prunus persica]
15 Hb_019181_030 0.1197346095 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 6-like [Pyrus x bretschneideri]
16 Hb_012796_020 0.120937317 - - PREDICTED: ADP-ribosylation factor 1 [Prunus mume]
17 Hb_011671_480 0.1239327857 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001829_040 0.1242183835 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
19 Hb_000139_530 0.1243726526 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000115_080 0.1245147688 - - PREDICTED: uncharacterized protein LOC105642032 [Jatropha curcas]

Gene co-expression network

sample Hb_124373_010 Hb_124373_010 Hb_000130_270 Hb_000130_270 Hb_124373_010--Hb_000130_270 Hb_000207_150 Hb_000207_150 Hb_124373_010--Hb_000207_150 Hb_002960_150 Hb_002960_150 Hb_124373_010--Hb_002960_150 Hb_003929_170 Hb_003929_170 Hb_124373_010--Hb_003929_170 Hb_000152_600 Hb_000152_600 Hb_124373_010--Hb_000152_600 Hb_000916_070 Hb_000916_070 Hb_124373_010--Hb_000916_070 Hb_032202_100 Hb_032202_100 Hb_000130_270--Hb_032202_100 Hb_161574_020 Hb_161574_020 Hb_000130_270--Hb_161574_020 Hb_163175_010 Hb_163175_010 Hb_000130_270--Hb_163175_010 Hb_006846_130 Hb_006846_130 Hb_000130_270--Hb_006846_130 Hb_000076_220 Hb_000076_220 Hb_000130_270--Hb_000076_220 Hb_000086_170 Hb_000086_170 Hb_000130_270--Hb_000086_170 Hb_000107_230 Hb_000107_230 Hb_000207_150--Hb_000107_230 Hb_000058_130 Hb_000058_130 Hb_000207_150--Hb_000058_130 Hb_000331_090 Hb_000331_090 Hb_000207_150--Hb_000331_090 Hb_007831_010 Hb_007831_010 Hb_000207_150--Hb_007831_010 Hb_000207_150--Hb_003929_170 Hb_000579_120 Hb_000579_120 Hb_000207_150--Hb_000579_120 Hb_002960_150--Hb_000916_070 Hb_001085_260 Hb_001085_260 Hb_002960_150--Hb_001085_260 Hb_007017_080 Hb_007017_080 Hb_002960_150--Hb_007017_080 Hb_000622_130 Hb_000622_130 Hb_002960_150--Hb_000622_130 Hb_010368_050 Hb_010368_050 Hb_002960_150--Hb_010368_050 Hb_001087_030 Hb_001087_030 Hb_003929_170--Hb_001087_030 Hb_000046_570 Hb_000046_570 Hb_003929_170--Hb_000046_570 Hb_000009_400 Hb_000009_400 Hb_003929_170--Hb_000009_400 Hb_000390_250 Hb_000390_250 Hb_003929_170--Hb_000390_250 Hb_003929_170--Hb_000107_230 Hb_081599_010 Hb_081599_010 Hb_000152_600--Hb_081599_010 Hb_005993_010 Hb_005993_010 Hb_000152_600--Hb_005993_010 Hb_000072_300 Hb_000072_300 Hb_000152_600--Hb_000072_300 Hb_019181_030 Hb_019181_030 Hb_000152_600--Hb_019181_030 Hb_000152_600--Hb_000130_270 Hb_000069_640 Hb_000069_640 Hb_000152_600--Hb_000069_640 Hb_000916_070--Hb_000622_130 Hb_067130_010 Hb_067130_010 Hb_000916_070--Hb_067130_010 Hb_000916_070--Hb_010368_050 Hb_003001_090 Hb_003001_090 Hb_000916_070--Hb_003001_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.13658 1.44709 3.56039 5.43188 1.83127 1.73971
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.43962 2.5712 0.920083 1.91228 1.41618

CAGE analysis