Hb_007017_080

Information

Type transcription factor
Description TF Family: bHLH
Location Contig7017: 79056-82449
Sequence    

Annotation

kegg
ID rcu:RCOM_0699220
description DNA binding protein, putative
nr
ID XP_002520177.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q0JXE7
description Transcription factor BPE OS=Arabidopsis thaliana GN=BPE PE=2 SV=1
trembl
ID B9S2F8
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0699220 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bhlh79

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54889: 78871-82121 , PASA_asmbl_54890: 79120-80805 , PASA_asmbl_54892: 82269-82412
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007017_080 0.0 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
2 Hb_010577_030 0.0920648833 - - PREDICTED: putative cyclin-B3-1 isoform X1 [Jatropha curcas]
3 Hb_000227_190 0.1020212338 - - PREDICTED: mitogen-activated protein kinase kinase kinase NPK1 isoform X1 [Jatropha curcas]
4 Hb_002960_150 0.105048035 - - hypothetical protein CISIN_1g029215mg [Citrus sinensis]
5 Hb_001799_030 0.1089274615 - - PREDICTED: ELMO domain-containing protein C-like [Jatropha curcas]
6 Hb_001085_260 0.1157056889 - - PREDICTED: uncharacterized protein LOC105633184 [Jatropha curcas]
7 Hb_012258_010 0.1225745982 - - PREDICTED: cyclase-associated protein 1 [Jatropha curcas]
8 Hb_003001_090 0.1233260965 - - PREDICTED: uncharacterized protein LOC105644365 [Jatropha curcas]
9 Hb_001951_130 0.12401267 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
10 Hb_000062_330 0.1242742584 - - unknown [Lotus japonicus]
11 Hb_000916_070 0.1252133757 - - PREDICTED: sister chromatid cohesion protein DCC1-like [Jatropha curcas]
12 Hb_000261_330 0.1252883323 - - PREDICTED: ER lumen protein-retaining receptor [Amborella trichopoda]
13 Hb_002304_150 0.1262686693 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
14 Hb_007811_040 0.1293459465 - - PREDICTED: trafficking protein particle complex subunit 4 isoform X1 [Gossypium raimondii]
15 Hb_005695_120 0.1300501646 - - Pollen-specific protein C13 precursor, putative [Ricinus communis]
16 Hb_004223_050 0.1307772152 - - hexokinase [Manihot esculenta]
17 Hb_005054_080 0.1317729962 transcription factor TF Family: LIM Pollen-specific protein SF3, putative [Ricinus communis]
18 Hb_002660_150 0.1337769528 - - PREDICTED: uncharacterized protein LOC105642207 isoform X1 [Jatropha curcas]
19 Hb_001124_070 0.1338544741 - - Serine/threonine-protein kinase ULK4 [Gossypium arboreum]
20 Hb_000975_190 0.1358525757 - - histone H4 [Zea mays]

Gene co-expression network

sample Hb_007017_080 Hb_007017_080 Hb_010577_030 Hb_010577_030 Hb_007017_080--Hb_010577_030 Hb_000227_190 Hb_000227_190 Hb_007017_080--Hb_000227_190 Hb_002960_150 Hb_002960_150 Hb_007017_080--Hb_002960_150 Hb_001799_030 Hb_001799_030 Hb_007017_080--Hb_001799_030 Hb_001085_260 Hb_001085_260 Hb_007017_080--Hb_001085_260 Hb_012258_010 Hb_012258_010 Hb_007017_080--Hb_012258_010 Hb_007811_040 Hb_007811_040 Hb_010577_030--Hb_007811_040 Hb_003849_130 Hb_003849_130 Hb_010577_030--Hb_003849_130 Hb_001124_070 Hb_001124_070 Hb_010577_030--Hb_001124_070 Hb_026549_020 Hb_026549_020 Hb_010577_030--Hb_026549_020 Hb_010577_030--Hb_001799_030 Hb_005695_120 Hb_005695_120 Hb_000227_190--Hb_005695_120 Hb_003001_090 Hb_003001_090 Hb_000227_190--Hb_003001_090 Hb_000227_190--Hb_010577_030 Hb_005054_080 Hb_005054_080 Hb_000227_190--Hb_005054_080 Hb_000916_070 Hb_000916_070 Hb_000227_190--Hb_000916_070 Hb_002960_150--Hb_000916_070 Hb_002960_150--Hb_001085_260 Hb_124373_010 Hb_124373_010 Hb_002960_150--Hb_124373_010 Hb_000622_130 Hb_000622_130 Hb_002960_150--Hb_000622_130 Hb_010368_050 Hb_010368_050 Hb_002960_150--Hb_010368_050 Hb_002304_150 Hb_002304_150 Hb_001799_030--Hb_002304_150 Hb_000720_040 Hb_000720_040 Hb_001799_030--Hb_000720_040 Hb_001799_030--Hb_012258_010 Hb_000300_500 Hb_000300_500 Hb_001799_030--Hb_000300_500 Hb_000110_310 Hb_000110_310 Hb_001799_030--Hb_000110_310 Hb_002681_100 Hb_002681_100 Hb_001799_030--Hb_002681_100 Hb_002485_030 Hb_002485_030 Hb_001085_260--Hb_002485_030 Hb_003760_030 Hb_003760_030 Hb_001085_260--Hb_003760_030 Hb_002284_210 Hb_002284_210 Hb_001085_260--Hb_002284_210 Hb_000207_150 Hb_000207_150 Hb_001085_260--Hb_000207_150 Hb_003119_090 Hb_003119_090 Hb_001085_260--Hb_003119_090 Hb_000375_350 Hb_000375_350 Hb_012258_010--Hb_000375_350 Hb_012258_010--Hb_002304_150 Hb_001300_150 Hb_001300_150 Hb_012258_010--Hb_001300_150 Hb_000345_310 Hb_000345_310 Hb_012258_010--Hb_000345_310 Hb_171376_010 Hb_171376_010 Hb_012258_010--Hb_171376_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.79301 1.47792 10.2147 9.79062 3.77327 4.69655
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.97429 3.91666 5.72775 2.65973 2.01655

CAGE analysis