Hb_026549_020

Information

Type -
Description -
Location Contig26549: 4690-5607
Sequence    

Annotation

kegg
ID rcu:RCOM_0294440
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002533004.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9FIH2
description Pentatricopeptide repeat-containing protein At5g42450, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E102 PE=2 SV=1
trembl
ID B9T435
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0294440 PE=4 SV=1
Gene Ontology
ID GO:0016787
description pentatricopeptide repeat-containing protein mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27738: 5006-5122 , PASA_asmbl_27739: 5181-5638
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_026549_020 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_029259_010 0.080958584 - - hypothetical protein JCGZ_20186 [Jatropha curcas]
3 Hb_001140_270 0.1136068142 - - hypothetical protein EUGRSUZ_E00166 [Eucalyptus grandis]
4 Hb_010577_030 0.1189456072 - - PREDICTED: putative cyclin-B3-1 isoform X1 [Jatropha curcas]
5 Hb_000025_030 0.1222315596 - - transcription factor, putative [Ricinus communis]
6 Hb_001012_010 0.1237182528 - - PREDICTED: XIAP-associated factor 1 [Jatropha curcas]
7 Hb_007982_080 0.1244388877 - - PREDICTED: uncharacterized protein LOC105636531 [Jatropha curcas]
8 Hb_001799_030 0.1262247683 - - PREDICTED: ELMO domain-containing protein C-like [Jatropha curcas]
9 Hb_002197_020 0.1264857064 - - DNA-directed RNA polymerase family protein [Theobroma cacao]
10 Hb_004070_020 0.1289912603 - - rhythmically-expressed protein 2 protein, putative [Ricinus communis]
11 Hb_000000_360 0.1293391125 - - PREDICTED: methyltransferase-like protein 2 [Populus euphratica]
12 Hb_003849_130 0.1305707991 - - PREDICTED: probable protein phosphatase 2C 14 [Jatropha curcas]
13 Hb_002168_060 0.1317911077 - - PREDICTED: inositol-pentakisphosphate 2-kinase-like isoform X1 [Jatropha curcas]
14 Hb_140833_010 0.1324030129 - - PREDICTED: uncharacterized protein LOC105647767 [Jatropha curcas]
15 Hb_005144_090 0.1353633642 - - PREDICTED: vacuolar protein sorting-associated protein 24 homolog 1-like [Citrus sinensis]
16 Hb_010931_070 0.1355276892 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 2 isoform X1 [Jatropha curcas]
17 Hb_000768_090 0.1362610199 - - PREDICTED: UTP--glucose-1-phosphate uridylyltransferase isoform X1 [Jatropha curcas]
18 Hb_004837_270 0.137720745 - - PREDICTED: cinnamoyl-CoA reductase 1 [Jatropha curcas]
19 Hb_000094_280 0.1383465253 - - PREDICTED: uncharacterized protein LOC105633771 [Jatropha curcas]
20 Hb_003943_050 0.1384920853 - - phosphoglucomutase, putative [Ricinus communis]

Gene co-expression network

sample Hb_026549_020 Hb_026549_020 Hb_029259_010 Hb_029259_010 Hb_026549_020--Hb_029259_010 Hb_001140_270 Hb_001140_270 Hb_026549_020--Hb_001140_270 Hb_010577_030 Hb_010577_030 Hb_026549_020--Hb_010577_030 Hb_000025_030 Hb_000025_030 Hb_026549_020--Hb_000025_030 Hb_001012_010 Hb_001012_010 Hb_026549_020--Hb_001012_010 Hb_007982_080 Hb_007982_080 Hb_026549_020--Hb_007982_080 Hb_002168_060 Hb_002168_060 Hb_029259_010--Hb_002168_060 Hb_029259_010--Hb_001012_010 Hb_000731_160 Hb_000731_160 Hb_029259_010--Hb_000731_160 Hb_004837_270 Hb_004837_270 Hb_029259_010--Hb_004837_270 Hb_005144_090 Hb_005144_090 Hb_029259_010--Hb_005144_090 Hb_009767_070 Hb_009767_070 Hb_001140_270--Hb_009767_070 Hb_001140_270--Hb_000025_030 Hb_011519_010 Hb_011519_010 Hb_001140_270--Hb_011519_010 Hb_001140_270--Hb_007982_080 Hb_003185_010 Hb_003185_010 Hb_001140_270--Hb_003185_010 Hb_007017_080 Hb_007017_080 Hb_010577_030--Hb_007017_080 Hb_007811_040 Hb_007811_040 Hb_010577_030--Hb_007811_040 Hb_003849_130 Hb_003849_130 Hb_010577_030--Hb_003849_130 Hb_001124_070 Hb_001124_070 Hb_010577_030--Hb_001124_070 Hb_001799_030 Hb_001799_030 Hb_010577_030--Hb_001799_030 Hb_000019_150 Hb_000019_150 Hb_000025_030--Hb_000019_150 Hb_000808_050 Hb_000808_050 Hb_000025_030--Hb_000808_050 Hb_000094_280 Hb_000094_280 Hb_000025_030--Hb_000094_280 Hb_001143_190 Hb_001143_190 Hb_000025_030--Hb_001143_190 Hb_001450_050 Hb_001450_050 Hb_000025_030--Hb_001450_050 Hb_007416_330 Hb_007416_330 Hb_000025_030--Hb_007416_330 Hb_005588_030 Hb_005588_030 Hb_001012_010--Hb_005588_030 Hb_000465_090 Hb_000465_090 Hb_001012_010--Hb_000465_090 Hb_002530_030 Hb_002530_030 Hb_001012_010--Hb_002530_030 Hb_009421_020 Hb_009421_020 Hb_001012_010--Hb_009421_020 Hb_009545_080 Hb_009545_080 Hb_001012_010--Hb_009545_080 Hb_000768_090 Hb_000768_090 Hb_001012_010--Hb_000768_090 Hb_073973_130 Hb_073973_130 Hb_007982_080--Hb_073973_130 Hb_020367_050 Hb_020367_050 Hb_007982_080--Hb_020367_050 Hb_002197_020 Hb_002197_020 Hb_007982_080--Hb_002197_020 Hb_005288_150 Hb_005288_150 Hb_007982_080--Hb_005288_150 Hb_000185_070 Hb_000185_070 Hb_007982_080--Hb_000185_070 Hb_027428_010 Hb_027428_010 Hb_007982_080--Hb_027428_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.998056 0.37445 2.42315 0.915069 1.0377 1.09952
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.846603 1.24281 1.29936 1.12703 0.360847

CAGE analysis