Hb_003849_130

Information

Type -
Description -
Location Contig3849: 83232-88335
Sequence    

Annotation

kegg
ID rcu:RCOM_0794030
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_012085524.1
description PREDICTED: probable protein phosphatase 2C 14 [Jatropha curcas]
swissprot
ID Q9FXE4
description Probable protein phosphatase 2C 14 OS=Arabidopsis thaliana GN=At1g67820 PE=2 SV=2
trembl
ID B9SVM2
description Protein phosphatase 2c, putative OS=Ricinus communis GN=RCOM_0794030 PE=3 SV=1
Gene Ontology
ID GO:0004722
description probable protein phosphatase 2c 14

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003849_130 0.0 - - PREDICTED: probable protein phosphatase 2C 14 [Jatropha curcas]
2 Hb_055062_020 0.0816704385 - - 60S ribosomal L35a-3 -like protein [Gossypium arboreum]
3 Hb_003057_090 0.1007064566 - - ATP synthase D chain, mitochondrial, putative [Ricinus communis]
4 Hb_000694_040 0.1032667932 - - Uncharacterized protein isoform 1 [Theobroma cacao]
5 Hb_010577_030 0.1077360869 - - PREDICTED: putative cyclin-B3-1 isoform X1 [Jatropha curcas]
6 Hb_004041_020 0.1110450764 - - ATP synthase D chain, mitochondrial, putative [Ricinus communis]
7 Hb_002374_570 0.1156039119 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
8 Hb_002168_060 0.1186403925 - - PREDICTED: inositol-pentakisphosphate 2-kinase-like isoform X1 [Jatropha curcas]
9 Hb_004970_220 0.1189250618 - - PREDICTED: uncharacterized protein LOC105633642 [Jatropha curcas]
10 Hb_000403_060 0.1195886815 - - PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]
11 Hb_001195_480 0.1196583061 - - cop9 complex subunit, putative [Ricinus communis]
12 Hb_000562_030 0.1209685606 - - conserved hypothetical protein [Ricinus communis]
13 Hb_008686_080 0.1211651648 - - PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Jatropha curcas]
14 Hb_157022_010 0.1222174481 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
15 Hb_005773_060 0.1224503127 - - defender against cell death, putative [Ricinus communis]
16 Hb_000329_270 0.1227688455 - - PREDICTED: spindle and kinetochore-associated protein 1 homolog [Jatropha curcas]
17 Hb_003018_010 0.1230858106 - - PREDICTED: 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic [Jatropha curcas]
18 Hb_004934_030 0.123596068 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Cucumis melo]
19 Hb_002946_190 0.1247057906 - - PREDICTED: nudix hydrolase 26, chloroplastic [Jatropha curcas]
20 Hb_002811_260 0.126855907 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]

Gene co-expression network

sample Hb_003849_130 Hb_003849_130 Hb_055062_020 Hb_055062_020 Hb_003849_130--Hb_055062_020 Hb_003057_090 Hb_003057_090 Hb_003849_130--Hb_003057_090 Hb_000694_040 Hb_000694_040 Hb_003849_130--Hb_000694_040 Hb_010577_030 Hb_010577_030 Hb_003849_130--Hb_010577_030 Hb_004041_020 Hb_004041_020 Hb_003849_130--Hb_004041_020 Hb_002374_570 Hb_002374_570 Hb_003849_130--Hb_002374_570 Hb_000317_390 Hb_000317_390 Hb_055062_020--Hb_000317_390 Hb_000403_060 Hb_000403_060 Hb_055062_020--Hb_000403_060 Hb_001341_150 Hb_001341_150 Hb_055062_020--Hb_001341_150 Hb_000261_140 Hb_000261_140 Hb_055062_020--Hb_000261_140 Hb_026889_030 Hb_026889_030 Hb_055062_020--Hb_026889_030 Hb_005054_060 Hb_005054_060 Hb_003057_090--Hb_005054_060 Hb_001195_480 Hb_001195_480 Hb_003057_090--Hb_001195_480 Hb_000815_320 Hb_000815_320 Hb_003057_090--Hb_000815_320 Hb_118419_010 Hb_118419_010 Hb_003057_090--Hb_118419_010 Hb_002168_060 Hb_002168_060 Hb_003057_090--Hb_002168_060 Hb_000580_090 Hb_000580_090 Hb_003057_090--Hb_000580_090 Hb_004934_030 Hb_004934_030 Hb_000694_040--Hb_004934_030 Hb_000000_360 Hb_000000_360 Hb_000694_040--Hb_000000_360 Hb_007477_070 Hb_007477_070 Hb_000694_040--Hb_007477_070 Hb_002374_170 Hb_002374_170 Hb_000694_040--Hb_002374_170 Hb_000000_210 Hb_000000_210 Hb_000694_040--Hb_000000_210 Hb_004787_060 Hb_004787_060 Hb_000694_040--Hb_004787_060 Hb_007017_080 Hb_007017_080 Hb_010577_030--Hb_007017_080 Hb_007811_040 Hb_007811_040 Hb_010577_030--Hb_007811_040 Hb_001124_070 Hb_001124_070 Hb_010577_030--Hb_001124_070 Hb_026549_020 Hb_026549_020 Hb_010577_030--Hb_026549_020 Hb_001799_030 Hb_001799_030 Hb_010577_030--Hb_001799_030 Hb_002946_190 Hb_002946_190 Hb_004041_020--Hb_002946_190 Hb_000413_240 Hb_000413_240 Hb_004041_020--Hb_000413_240 Hb_001863_380 Hb_001863_380 Hb_004041_020--Hb_001863_380 Hb_000429_040 Hb_000429_040 Hb_004041_020--Hb_000429_040 Hb_000599_260 Hb_000599_260 Hb_004041_020--Hb_000599_260 Hb_012565_070 Hb_012565_070 Hb_004041_020--Hb_012565_070 Hb_002016_170 Hb_002016_170 Hb_002374_570--Hb_002016_170 Hb_002374_570--Hb_118419_010 Hb_001124_090 Hb_001124_090 Hb_002374_570--Hb_001124_090 Hb_000457_180 Hb_000457_180 Hb_002374_570--Hb_000457_180 Hb_001318_250 Hb_001318_250 Hb_002374_570--Hb_001318_250 Hb_003728_060 Hb_003728_060 Hb_002374_570--Hb_003728_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.28013 0.295152 2.92523 1.58543 1.54023 1.21934
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.21879 2.75203 1.69031 1.1227 0.50253

CAGE analysis