Hb_002374_570

Information

Type -
Description -
Location Contig2374: 480649-485279
Sequence    

Annotation

kegg
ID rcu:RCOM_1061150
description vesicle-associated membrane protein, putative
nr
ID XP_012069970.1
description PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
swissprot
ID Q9SHC8
description Vesicle-associated protein 1-2 OS=Arabidopsis thaliana GN=PVA12 PE=1 SV=1
trembl
ID A0A067KY14
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03394 PE=4 SV=1
Gene Ontology
ID GO:0005789
description vesicle-associated protein 1-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24925: 480742-485223 , PASA_asmbl_24926: 483167-483506 , PASA_asmbl_24928: 484502-484730
cDNA
(Sanger)
(ID:Location)		 032_H15.ab1: 480742-483102 , 042_G05.ab1: 480742-483132

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002374_570 0.0 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
2 Hb_002016_170 0.0883549825 - - DNA binding protein, putative [Ricinus communis]
3 Hb_118419_010 0.0917320903 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
4 Hb_001124_090 0.0940415809 - - acyl carrier protein, putative [Ricinus communis]
5 Hb_000457_180 0.0955299092 - - PREDICTED: cytochrome c1-2, heme protein, mitochondrial [Jatropha curcas]
6 Hb_001318_250 0.0959248482 - - PREDICTED: uncharacterized protein LOC105642666 [Jatropha curcas]
7 Hb_003728_060 0.0959906539 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 4-like [Jatropha curcas]
8 Hb_003057_090 0.0970303933 - - ATP synthase D chain, mitochondrial, putative [Ricinus communis]
9 Hb_171376_010 0.0973060547 - - PREDICTED: uncharacterized protein LOC105630877 isoform X1 [Jatropha curcas]
10 Hb_001604_060 0.0988642462 - - PREDICTED: TPR repeat-containing thioredoxin TTL1 [Jatropha curcas]
11 Hb_026889_030 0.1005382022 - - protein with unknown function [Ricinus communis]
12 Hb_006059_050 0.1006757598 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
13 Hb_004195_270 0.1014706022 - - Ubiquitin-conjugating enzyme 16 [Theobroma cacao]
14 Hb_002304_150 0.1016871496 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
15 Hb_008686_080 0.1018562764 - - PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Jatropha curcas]
16 Hb_012258_010 0.1019831667 - - PREDICTED: cyclase-associated protein 1 [Jatropha curcas]
17 Hb_000317_390 0.1023959444 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
18 Hb_001195_480 0.1024265753 - - cop9 complex subunit, putative [Ricinus communis]
19 Hb_000000_210 0.1028852358 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like isoform X1 [Jatropha curcas]
20 Hb_000934_250 0.1033770345 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]

Gene co-expression network

sample Hb_002374_570 Hb_002374_570 Hb_002016_170 Hb_002016_170 Hb_002374_570--Hb_002016_170 Hb_118419_010 Hb_118419_010 Hb_002374_570--Hb_118419_010 Hb_001124_090 Hb_001124_090 Hb_002374_570--Hb_001124_090 Hb_000457_180 Hb_000457_180 Hb_002374_570--Hb_000457_180 Hb_001318_250 Hb_001318_250 Hb_002374_570--Hb_001318_250 Hb_003728_060 Hb_003728_060 Hb_002374_570--Hb_003728_060 Hb_003994_290 Hb_003994_290 Hb_002016_170--Hb_003994_290 Hb_000212_330 Hb_000212_330 Hb_002016_170--Hb_000212_330 Hb_001983_020 Hb_001983_020 Hb_002016_170--Hb_001983_020 Hb_000094_300 Hb_000094_300 Hb_002016_170--Hb_000094_300 Hb_181729_010 Hb_181729_010 Hb_002016_170--Hb_181729_010 Hb_004109_170 Hb_004109_170 Hb_118419_010--Hb_004109_170 Hb_000205_090 Hb_000205_090 Hb_118419_010--Hb_000205_090 Hb_000580_090 Hb_000580_090 Hb_118419_010--Hb_000580_090 Hb_004195_270 Hb_004195_270 Hb_118419_010--Hb_004195_270 Hb_001105_030 Hb_001105_030 Hb_118419_010--Hb_001105_030 Hb_000815_320 Hb_000815_320 Hb_118419_010--Hb_000815_320 Hb_001124_090--Hb_001318_250 Hb_000982_090 Hb_000982_090 Hb_001124_090--Hb_000982_090 Hb_000934_250 Hb_000934_250 Hb_001124_090--Hb_000934_250 Hb_006059_050 Hb_006059_050 Hb_001124_090--Hb_006059_050 Hb_000317_390 Hb_000317_390 Hb_001124_090--Hb_000317_390 Hb_002601_110 Hb_002601_110 Hb_001124_090--Hb_002601_110 Hb_001341_150 Hb_001341_150 Hb_000457_180--Hb_001341_150 Hb_003362_030 Hb_003362_030 Hb_000457_180--Hb_003362_030 Hb_008071_020 Hb_008071_020 Hb_000457_180--Hb_008071_020 Hb_012565_070 Hb_012565_070 Hb_000457_180--Hb_012565_070 Hb_001279_080 Hb_001279_080 Hb_000457_180--Hb_001279_080 Hb_150651_040 Hb_150651_040 Hb_000457_180--Hb_150651_040 Hb_001318_250--Hb_000934_250 Hb_152784_010 Hb_152784_010 Hb_001318_250--Hb_152784_010 Hb_001318_250--Hb_000317_390 Hb_000103_320 Hb_000103_320 Hb_001318_250--Hb_000103_320 Hb_001016_030 Hb_001016_030 Hb_001318_250--Hb_001016_030 Hb_004162_130 Hb_004162_130 Hb_003728_060--Hb_004162_130 Hb_000375_350 Hb_000375_350 Hb_003728_060--Hb_000375_350 Hb_002871_190 Hb_002871_190 Hb_003728_060--Hb_002871_190 Hb_050514_010 Hb_050514_010 Hb_003728_060--Hb_050514_010 Hb_000260_030 Hb_000260_030 Hb_003728_060--Hb_000260_030 Hb_026889_030 Hb_026889_030 Hb_003728_060--Hb_026889_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.7841 10.8391 41.7082 30.4571 20.031 22.0226
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
48.5004 37.5075 33.3958 13.6665 16.723

CAGE analysis