Hb_181729_010

Information

Type -
Description -
Location Contig181729: 14109-20515
Sequence    

Annotation

kegg
ID rcu:RCOM_0119080
description DNA polymerase epsilon subunit B, putative (EC:2.7.7.7)
nr
ID XP_012078484.1
description PREDICTED: DNA polymerase epsilon subunit 2 isoform X1 [Jatropha curcas]
swissprot
ID Q5ZKQ6
description DNA polymerase epsilon subunit 2 OS=Gallus gallus GN=POLE2 PE=2 SV=1
trembl
ID A0A067K917
description DNA polymerase epsilon subunit 2 OS=Jatropha curcas GN=JCGZ_13167 PE=3 SV=1
Gene Ontology
ID GO:0008622
description dna polymerase epsilon subunit 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17686: 14267-20439 , PASA_asmbl_17687: 15570-17747
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_181729_010 0.0 - - PREDICTED: DNA polymerase epsilon subunit 2 isoform X1 [Jatropha curcas]
2 Hb_010368_010 0.0803958723 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
3 Hb_002234_180 0.0885188016 - - conserved hypothetical protein [Ricinus communis]
4 Hb_008013_050 0.0910583497 transcription factor TF Family: PHD PREDICTED: PHD finger protein At1g33420 [Jatropha curcas]
5 Hb_002016_170 0.1023324075 - - DNA binding protein, putative [Ricinus communis]
6 Hb_019280_050 0.1060128502 - - PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 [Jatropha curcas]
7 Hb_171376_010 0.1063470618 - - PREDICTED: uncharacterized protein LOC105630877 isoform X1 [Jatropha curcas]
8 Hb_002686_170 0.1067846117 - - PREDICTED: uncharacterized protein LOC105632645 isoform X1 [Jatropha curcas]
9 Hb_001699_220 0.1089588925 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH121-like [Jatropha curcas]
10 Hb_022250_060 0.111493146 - - PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-1-like isoform X1 [Jatropha curcas]
11 Hb_004724_270 0.1116614639 - - hypothetical protein JCGZ_12706 [Jatropha curcas]
12 Hb_000869_080 0.1121165202 - - PREDICTED: uncharacterized protein LOC105641084 isoform X2 [Jatropha curcas]
13 Hb_001300_150 0.1138086362 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]
14 Hb_003124_150 0.1141306836 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 28-like [Jatropha curcas]
15 Hb_003502_060 0.1142654072 - - PREDICTED: alpha-1,3/1,6-mannosyltransferase ALG2 [Jatropha curcas]
16 Hb_004162_130 0.1160889192 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002043_030 0.1162484477 - - hypothetical protein RCOM_1486170 [Ricinus communis]
18 Hb_154471_020 0.1163323487 - - squalene synthetase [Euphorbia tirucalli]
19 Hb_000729_030 0.1166270032 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
20 Hb_000926_090 0.1166688038 - - PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_181729_010 Hb_181729_010 Hb_010368_010 Hb_010368_010 Hb_181729_010--Hb_010368_010 Hb_002234_180 Hb_002234_180 Hb_181729_010--Hb_002234_180 Hb_008013_050 Hb_008013_050 Hb_181729_010--Hb_008013_050 Hb_002016_170 Hb_002016_170 Hb_181729_010--Hb_002016_170 Hb_019280_050 Hb_019280_050 Hb_181729_010--Hb_019280_050 Hb_171376_010 Hb_171376_010 Hb_181729_010--Hb_171376_010 Hb_013358_040 Hb_013358_040 Hb_010368_010--Hb_013358_040 Hb_010368_010--Hb_008013_050 Hb_000699_030 Hb_000699_030 Hb_010368_010--Hb_000699_030 Hb_000729_030 Hb_000729_030 Hb_010368_010--Hb_000729_030 Hb_000336_150 Hb_000336_150 Hb_010368_010--Hb_000336_150 Hb_000069_380 Hb_000069_380 Hb_010368_010--Hb_000069_380 Hb_000331_680 Hb_000331_680 Hb_002234_180--Hb_000331_680 Hb_000077_140 Hb_000077_140 Hb_002234_180--Hb_000077_140 Hb_002234_180--Hb_010368_010 Hb_003747_100 Hb_003747_100 Hb_002234_180--Hb_003747_100 Hb_004586_300 Hb_004586_300 Hb_002234_180--Hb_004586_300 Hb_006059_050 Hb_006059_050 Hb_008013_050--Hb_006059_050 Hb_002301_150 Hb_002301_150 Hb_008013_050--Hb_002301_150 Hb_003502_060 Hb_003502_060 Hb_008013_050--Hb_003502_060 Hb_003151_040 Hb_003151_040 Hb_008013_050--Hb_003151_040 Hb_010098_050 Hb_010098_050 Hb_008013_050--Hb_010098_050 Hb_000030_030 Hb_000030_030 Hb_008013_050--Hb_000030_030 Hb_002374_570 Hb_002374_570 Hb_002016_170--Hb_002374_570 Hb_003994_290 Hb_003994_290 Hb_002016_170--Hb_003994_290 Hb_000212_330 Hb_000212_330 Hb_002016_170--Hb_000212_330 Hb_001983_020 Hb_001983_020 Hb_002016_170--Hb_001983_020 Hb_000094_300 Hb_000094_300 Hb_002016_170--Hb_000094_300 Hb_019280_050--Hb_010098_050 Hb_001470_030 Hb_001470_030 Hb_019280_050--Hb_001470_030 Hb_019280_050--Hb_000729_030 Hb_000373_070 Hb_000373_070 Hb_019280_050--Hb_000373_070 Hb_003124_150 Hb_003124_150 Hb_019280_050--Hb_003124_150 Hb_019280_050--Hb_008013_050 Hb_000375_350 Hb_000375_350 Hb_171376_010--Hb_000375_350 Hb_012258_010 Hb_012258_010 Hb_171376_010--Hb_012258_010 Hb_002304_150 Hb_002304_150 Hb_171376_010--Hb_002304_150 Hb_000690_160 Hb_000690_160 Hb_171376_010--Hb_000690_160 Hb_000869_020 Hb_000869_020 Hb_171376_010--Hb_000869_020 Hb_003728_060 Hb_003728_060 Hb_171376_010--Hb_003728_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.0431 3.96046 6.16279 3.66332 1.39566 3.55125
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.63188 4.48983 5.77166 2.82759 3.49193

CAGE analysis