Hb_001124_070

Information

Type -
Description -
Location Contig1124: 135391-142506
Sequence    

Annotation

kegg
ID pop:POPTR_0008s20040g
description POPTRDRAFT_657597; hypothetical protein
nr
ID KHG14685.1
description Serine/threonine-protein kinase ULK4 [Gossypium arboreum]
swissprot
ID Q5R4M2
description Serine/threonine-protein kinase ULK4 OS=Pongo abelii GN=ULK4 PE=2 SV=1
trembl
ID A0A0B0NPB5
description Serine/threonine-protein kinase ULK4 OS=Gossypium arboreum GN=F383_02511 PE=4 SV=1
Gene Ontology
ID GO:0009506
description serine threonine-protein kinase ulk4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03796: 135277-138500 , PASA_asmbl_03797: 138698-142537
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001124_070 0.0 - - Serine/threonine-protein kinase ULK4 [Gossypium arboreum]
2 Hb_010577_030 0.1089373587 - - PREDICTED: putative cyclin-B3-1 isoform X1 [Jatropha curcas]
3 Hb_003001_090 0.1248610495 - - PREDICTED: uncharacterized protein LOC105644365 [Jatropha curcas]
4 Hb_000345_510 0.1262816396 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
5 Hb_007017_080 0.1338544741 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
6 Hb_006132_110 0.1401940713 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003849_130 0.1464015547 - - PREDICTED: probable protein phosphatase 2C 14 [Jatropha curcas]
8 Hb_000227_190 0.1465720758 - - PREDICTED: mitogen-activated protein kinase kinase kinase NPK1 isoform X1 [Jatropha curcas]
9 Hb_000369_010 0.1492962123 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000086_700 0.1501607342 - - PREDICTED: 14-3-3 protein 6 [Jatropha curcas]
11 Hb_001140_270 0.153523542 - - hypothetical protein EUGRSUZ_E00166 [Eucalyptus grandis]
12 Hb_001277_280 0.1556435598 - - PREDICTED: protein argonaute 10 [Jatropha curcas]
13 Hb_000392_230 0.1577957163 - - conserved hypothetical protein [Ricinus communis]
14 Hb_030982_030 0.1595008793 - - PREDICTED: uncharacterized protein LOC105636001 isoform X1 [Jatropha curcas]
15 Hb_000331_250 0.1598995579 - - PREDICTED: mitochondrial pyruvate carrier 1 [Vitis vinifera]
16 Hb_000916_070 0.1600351535 - - PREDICTED: sister chromatid cohesion protein DCC1-like [Jatropha curcas]
17 Hb_003213_010 0.1601334369 - - PREDICTED: uncharacterized protein LOC105641815 [Jatropha curcas]
18 Hb_003119_090 0.1607799593 - - PREDICTED: 14-3-3 protein 6 [Jatropha curcas]
19 Hb_000649_230 0.1608840407 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
20 Hb_005773_060 0.1611962128 - - defender against cell death, putative [Ricinus communis]

Gene co-expression network

sample Hb_001124_070 Hb_001124_070 Hb_010577_030 Hb_010577_030 Hb_001124_070--Hb_010577_030 Hb_003001_090 Hb_003001_090 Hb_001124_070--Hb_003001_090 Hb_000345_510 Hb_000345_510 Hb_001124_070--Hb_000345_510 Hb_007017_080 Hb_007017_080 Hb_001124_070--Hb_007017_080 Hb_006132_110 Hb_006132_110 Hb_001124_070--Hb_006132_110 Hb_003849_130 Hb_003849_130 Hb_001124_070--Hb_003849_130 Hb_010577_030--Hb_007017_080 Hb_007811_040 Hb_007811_040 Hb_010577_030--Hb_007811_040 Hb_010577_030--Hb_003849_130 Hb_026549_020 Hb_026549_020 Hb_010577_030--Hb_026549_020 Hb_001799_030 Hb_001799_030 Hb_010577_030--Hb_001799_030 Hb_000916_070 Hb_000916_070 Hb_003001_090--Hb_000916_070 Hb_003001_090--Hb_007017_080 Hb_002960_150 Hb_002960_150 Hb_003001_090--Hb_002960_150 Hb_010381_010 Hb_010381_010 Hb_003001_090--Hb_010381_010 Hb_000227_190 Hb_000227_190 Hb_003001_090--Hb_000227_190 Hb_002272_050 Hb_002272_050 Hb_000345_510--Hb_002272_050 Hb_003213_010 Hb_003213_010 Hb_000345_510--Hb_003213_010 Hb_000345_510--Hb_006132_110 Hb_000875_080 Hb_000875_080 Hb_000345_510--Hb_000875_080 Hb_000049_140 Hb_000049_140 Hb_000345_510--Hb_000049_140 Hb_002163_050 Hb_002163_050 Hb_000345_510--Hb_002163_050 Hb_007017_080--Hb_000227_190 Hb_007017_080--Hb_002960_150 Hb_007017_080--Hb_001799_030 Hb_001085_260 Hb_001085_260 Hb_007017_080--Hb_001085_260 Hb_012258_010 Hb_012258_010 Hb_007017_080--Hb_012258_010 Hb_004312_010 Hb_004312_010 Hb_006132_110--Hb_004312_010 Hb_000086_700 Hb_000086_700 Hb_006132_110--Hb_000086_700 Hb_006132_110--Hb_003213_010 Hb_000300_260 Hb_000300_260 Hb_006132_110--Hb_000300_260 Hb_000649_230 Hb_000649_230 Hb_006132_110--Hb_000649_230 Hb_016467_010 Hb_016467_010 Hb_006132_110--Hb_016467_010 Hb_055062_020 Hb_055062_020 Hb_003849_130--Hb_055062_020 Hb_003057_090 Hb_003057_090 Hb_003849_130--Hb_003057_090 Hb_000694_040 Hb_000694_040 Hb_003849_130--Hb_000694_040 Hb_004041_020 Hb_004041_020 Hb_003849_130--Hb_004041_020 Hb_002374_570 Hb_002374_570 Hb_003849_130--Hb_002374_570
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.35005 0.992828 5.82082 3.88605 2.96659 1.46555
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.26707 2.54299 1.77562 1.69664 0.360179

CAGE analysis