Hb_010577_030

Information

Type -
Description -
Location Contig10577: 33361-45293
Sequence    

Annotation

kegg
ID pop:POPTR_0010s18030g
description POPTRDRAFT_567093; hypothetical protein
nr
ID XP_012084322.1
description PREDICTED: putative cyclin-B3-1 isoform X1 [Jatropha curcas]
swissprot
ID Q9SA32
description Putative cyclin-B3-1 OS=Arabidopsis thaliana GN=CYCB3-1 PE=3 SV=2
trembl
ID A0A067JY52
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19821 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01894: 32701-41383 , PASA_asmbl_01895: 41435-45512
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010577_030 0.0 - - PREDICTED: putative cyclin-B3-1 isoform X1 [Jatropha curcas]
2 Hb_007017_080 0.0920648833 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
3 Hb_007811_040 0.0924504063 - - PREDICTED: trafficking protein particle complex subunit 4 isoform X1 [Gossypium raimondii]
4 Hb_003849_130 0.1077360869 - - PREDICTED: probable protein phosphatase 2C 14 [Jatropha curcas]
5 Hb_001124_070 0.1089373587 - - Serine/threonine-protein kinase ULK4 [Gossypium arboreum]
6 Hb_026549_020 0.1189456072 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_001799_030 0.1193426205 - - PREDICTED: ELMO domain-containing protein C-like [Jatropha curcas]
8 Hb_000062_330 0.1299043496 - - unknown [Lotus japonicus]
9 Hb_000227_190 0.1344035548 - - PREDICTED: mitogen-activated protein kinase kinase kinase NPK1 isoform X1 [Jatropha curcas]
10 Hb_004041_020 0.1355650321 - - ATP synthase D chain, mitochondrial, putative [Ricinus communis]
11 Hb_001252_240 0.1363403231 - - PREDICTED: protein SPIRAL1-like 3 [Jatropha curcas]
12 Hb_001085_260 0.1368497641 - - PREDICTED: uncharacterized protein LOC105633184 [Jatropha curcas]
13 Hb_000916_070 0.1370501126 - - PREDICTED: sister chromatid cohesion protein DCC1-like [Jatropha curcas]
14 Hb_003001_090 0.1374674215 - - PREDICTED: uncharacterized protein LOC105644365 [Jatropha curcas]
15 Hb_002304_150 0.1374860334 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
16 Hb_001951_130 0.1384525831 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
17 Hb_002946_190 0.1417733768 - - PREDICTED: nudix hydrolase 26, chloroplastic [Jatropha curcas]
18 Hb_000046_040 0.1431617946 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000369_010 0.1444599392 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000890_130 0.1450809398 - - PREDICTED: probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 [Phoenix dactylifera]

Gene co-expression network

sample Hb_010577_030 Hb_010577_030 Hb_007017_080 Hb_007017_080 Hb_010577_030--Hb_007017_080 Hb_007811_040 Hb_007811_040 Hb_010577_030--Hb_007811_040 Hb_003849_130 Hb_003849_130 Hb_010577_030--Hb_003849_130 Hb_001124_070 Hb_001124_070 Hb_010577_030--Hb_001124_070 Hb_026549_020 Hb_026549_020 Hb_010577_030--Hb_026549_020 Hb_001799_030 Hb_001799_030 Hb_010577_030--Hb_001799_030 Hb_000227_190 Hb_000227_190 Hb_007017_080--Hb_000227_190 Hb_002960_150 Hb_002960_150 Hb_007017_080--Hb_002960_150 Hb_007017_080--Hb_001799_030 Hb_001085_260 Hb_001085_260 Hb_007017_080--Hb_001085_260 Hb_012258_010 Hb_012258_010 Hb_007017_080--Hb_012258_010 Hb_000062_330 Hb_000062_330 Hb_007811_040--Hb_000062_330 Hb_000832_190 Hb_000832_190 Hb_007811_040--Hb_000832_190 Hb_004041_020 Hb_004041_020 Hb_007811_040--Hb_004041_020 Hb_003119_060 Hb_003119_060 Hb_007811_040--Hb_003119_060 Hb_000890_130 Hb_000890_130 Hb_007811_040--Hb_000890_130 Hb_055062_020 Hb_055062_020 Hb_003849_130--Hb_055062_020 Hb_003057_090 Hb_003057_090 Hb_003849_130--Hb_003057_090 Hb_000694_040 Hb_000694_040 Hb_003849_130--Hb_000694_040 Hb_003849_130--Hb_004041_020 Hb_002374_570 Hb_002374_570 Hb_003849_130--Hb_002374_570 Hb_003001_090 Hb_003001_090 Hb_001124_070--Hb_003001_090 Hb_000345_510 Hb_000345_510 Hb_001124_070--Hb_000345_510 Hb_001124_070--Hb_007017_080 Hb_006132_110 Hb_006132_110 Hb_001124_070--Hb_006132_110 Hb_001124_070--Hb_003849_130 Hb_029259_010 Hb_029259_010 Hb_026549_020--Hb_029259_010 Hb_001140_270 Hb_001140_270 Hb_026549_020--Hb_001140_270 Hb_000025_030 Hb_000025_030 Hb_026549_020--Hb_000025_030 Hb_001012_010 Hb_001012_010 Hb_026549_020--Hb_001012_010 Hb_007982_080 Hb_007982_080 Hb_026549_020--Hb_007982_080 Hb_002304_150 Hb_002304_150 Hb_001799_030--Hb_002304_150 Hb_000720_040 Hb_000720_040 Hb_001799_030--Hb_000720_040 Hb_001799_030--Hb_012258_010 Hb_000300_500 Hb_000300_500 Hb_001799_030--Hb_000300_500 Hb_000110_310 Hb_000110_310 Hb_001799_030--Hb_000110_310 Hb_002681_100 Hb_002681_100 Hb_001799_030--Hb_002681_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.79424 0.506807 7.44187 4.59158 2.74791 2.41485
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.34045 3.52801 3.17837 2.07721 1.11859

CAGE analysis