Hb_002960_150

Information

Type -
Description -
Location Contig2960: 125377-126242
Sequence    

Annotation

kegg
ID cic:CICLE_v10002551mg
description hypothetical protein
nr
ID KDO84913.1
description hypothetical protein CISIN_1g029215mg [Citrus sinensis]
swissprot
ID O04369
description Rac-like GTP-binding protein RAC1 OS=Lotus japonicus GN=RAC1 PE=2 SV=1
trembl
ID A0A067GYW1
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029215mg PE=3 SV=1
Gene Ontology
ID GO:0005730
description rac-like gtp-binding protein 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30970: 114237-127135 , PASA_asmbl_30971: 114302-126200 , PASA_asmbl_30972: 114793-127133
cDNA
(Sanger)
(ID:Location)		 006_K11.ab1: 114728-127048 , 026_J18.ab1: 114873-127048 , 033_C19.ab1: 114751-127135

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002960_150 0.0 - - hypothetical protein CISIN_1g029215mg [Citrus sinensis]
2 Hb_000916_070 0.0898582271 - - PREDICTED: sister chromatid cohesion protein DCC1-like [Jatropha curcas]
3 Hb_001085_260 0.1005836454 - - PREDICTED: uncharacterized protein LOC105633184 [Jatropha curcas]
4 Hb_124373_010 0.1042251655 - - PREDICTED: BRCA1-A complex subunit BRE isoform X1 [Jatropha curcas]
5 Hb_007017_080 0.105048035 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
6 Hb_000622_130 0.1145067655 - - PREDICTED: tubulin gamma-1 chain [Vitis vinifera]
7 Hb_010368_050 0.1167115978 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
8 Hb_002284_210 0.1202113992 - - PREDICTED: protein canopy-1 [Jatropha curcas]
9 Hb_019181_030 0.1228788386 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 6-like [Pyrus x bretschneideri]
10 Hb_002351_030 0.1230841759 - - catalytic, putative [Ricinus communis]
11 Hb_003001_090 0.1252791125 - - PREDICTED: uncharacterized protein LOC105644365 [Jatropha curcas]
12 Hb_000072_300 0.1254875371 - - PREDICTED: probable galacturonosyltransferase 9 [Jatropha curcas]
13 Hb_010381_010 0.1255510002 - - WD-repeat protein, putative [Ricinus communis]
14 Hb_000172_510 0.1277781489 - - hypothetical protein B456_007G243100 [Gossypium raimondii]
15 Hb_008566_040 0.1280284319 - - PREDICTED: uncharacterized protein LOC105647590 isoform X1 [Jatropha curcas]
16 Hb_003929_170 0.1299361183 - - PREDICTED: novel plant SNARE 13 [Jatropha curcas]
17 Hb_000152_600 0.1299578617 - - PREDICTED: protein jagunal homolog 1 [Jatropha curcas]
18 Hb_000359_290 0.1300673985 - - Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative [Ricinus communis]
19 Hb_002485_030 0.1302634109 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase 1-like [Jatropha curcas]
20 Hb_000684_260 0.130493293 - - PREDICTED: probable DNA helicase MCM8 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002960_150 Hb_002960_150 Hb_000916_070 Hb_000916_070 Hb_002960_150--Hb_000916_070 Hb_001085_260 Hb_001085_260 Hb_002960_150--Hb_001085_260 Hb_124373_010 Hb_124373_010 Hb_002960_150--Hb_124373_010 Hb_007017_080 Hb_007017_080 Hb_002960_150--Hb_007017_080 Hb_000622_130 Hb_000622_130 Hb_002960_150--Hb_000622_130 Hb_010368_050 Hb_010368_050 Hb_002960_150--Hb_010368_050 Hb_000916_070--Hb_000622_130 Hb_067130_010 Hb_067130_010 Hb_000916_070--Hb_067130_010 Hb_000916_070--Hb_124373_010 Hb_000916_070--Hb_010368_050 Hb_003001_090 Hb_003001_090 Hb_000916_070--Hb_003001_090 Hb_002485_030 Hb_002485_030 Hb_001085_260--Hb_002485_030 Hb_003760_030 Hb_003760_030 Hb_001085_260--Hb_003760_030 Hb_002284_210 Hb_002284_210 Hb_001085_260--Hb_002284_210 Hb_000207_150 Hb_000207_150 Hb_001085_260--Hb_000207_150 Hb_003119_090 Hb_003119_090 Hb_001085_260--Hb_003119_090 Hb_000130_270 Hb_000130_270 Hb_124373_010--Hb_000130_270 Hb_124373_010--Hb_000207_150 Hb_003929_170 Hb_003929_170 Hb_124373_010--Hb_003929_170 Hb_000152_600 Hb_000152_600 Hb_124373_010--Hb_000152_600 Hb_010577_030 Hb_010577_030 Hb_007017_080--Hb_010577_030 Hb_000227_190 Hb_000227_190 Hb_007017_080--Hb_000227_190 Hb_001799_030 Hb_001799_030 Hb_007017_080--Hb_001799_030 Hb_007017_080--Hb_001085_260 Hb_012258_010 Hb_012258_010 Hb_007017_080--Hb_012258_010 Hb_000622_130--Hb_000152_600 Hb_001191_080 Hb_001191_080 Hb_000622_130--Hb_001191_080 Hb_000832_190 Hb_000832_190 Hb_000622_130--Hb_000832_190 Hb_005914_110 Hb_005914_110 Hb_000622_130--Hb_005914_110 Hb_000926_200 Hb_000926_200 Hb_000622_130--Hb_000926_200 Hb_001951_130 Hb_001951_130 Hb_010368_050--Hb_001951_130 Hb_000127_140 Hb_000127_140 Hb_010368_050--Hb_000127_140 Hb_019181_030 Hb_019181_030 Hb_010368_050--Hb_019181_030 Hb_010407_140 Hb_010407_140 Hb_010368_050--Hb_010407_140 Hb_000392_340 Hb_000392_340 Hb_010368_050--Hb_000392_340 Hb_083380_020 Hb_083380_020 Hb_010368_050--Hb_083380_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
68.5045 34.4796 158.234 201.396 60.684 71.8333
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
67.6922 68.5964 51.1091 37.5983 43.0502

CAGE analysis