Hb_083380_020

Information

Type -
Description -
Location Contig83380: 13002-18948
Sequence    

Annotation

kegg
ID rcu:RCOM_0813460
description longevity assurance factor, putative
nr
ID XP_012066874.1
description PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
swissprot
ID Q9LJK3
description LAG1 longevity assurance homolog 2 OS=Arabidopsis thaliana GN=LAG2 PE=1 SV=1
trembl
ID A0A067LDZ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01603 PE=4 SV=1
Gene Ontology
ID GO:0012505
description lag1 longevity assurance homolog 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_083380_020 0.0 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
2 Hb_010368_050 0.1002133088 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
3 Hb_008147_090 0.1066635016 - - conserved hypothetical protein [Ricinus communis]
4 Hb_007101_110 0.1144326185 - - PREDICTED: nucleobase-ascorbate transporter 7 [Jatropha curcas]
5 Hb_001951_130 0.1180634631 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
6 Hb_000181_350 0.1200565658 - - PREDICTED: uncharacterized protein LOC105111090 [Populus euphratica]
7 Hb_001511_260 0.1204922866 - - tryptophan biosynthesis protein, putative [Ricinus communis]
8 Hb_000832_190 0.1227915808 - - Rab3 [Hevea brasiliensis]
9 Hb_000029_070 0.1251736332 - - PREDICTED: cold-inducible RNA-binding protein B-like [Jatropha curcas]
10 Hb_000392_340 0.1264663141 - - PREDICTED: vacuolar protein sorting-associated protein 29 [Jatropha curcas]
11 Hb_004093_020 0.1267001664 - - Calcium-binding EF-hand family protein [Theobroma cacao]
12 Hb_166574_010 0.1267437513 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
13 Hb_004984_030 0.1280495023 - - protein with unknown function [Ricinus communis]
14 Hb_005460_060 0.1309626296 - - PREDICTED: proteasome assembly chaperone 2 [Jatropha curcas]
15 Hb_180343_010 0.134648817 - - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, putative [Ricinus communis]
16 Hb_019181_030 0.1369459285 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 6-like [Pyrus x bretschneideri]
17 Hb_003020_210 0.1369546542 - - Structural maintenance of chromosomes 2-2 -like protein [Gossypium arboreum]
18 Hb_001377_450 0.1372286927 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 2 isoform X1 [Jatropha curcas]
19 Hb_000152_600 0.1372553569 - - PREDICTED: protein jagunal homolog 1 [Jatropha curcas]
20 Hb_001221_030 0.1373531597 - - PREDICTED: adenylate kinase 4 [Jatropha curcas]

Gene co-expression network

sample Hb_083380_020 Hb_083380_020 Hb_010368_050 Hb_010368_050 Hb_083380_020--Hb_010368_050 Hb_008147_090 Hb_008147_090 Hb_083380_020--Hb_008147_090 Hb_007101_110 Hb_007101_110 Hb_083380_020--Hb_007101_110 Hb_001951_130 Hb_001951_130 Hb_083380_020--Hb_001951_130 Hb_000181_350 Hb_000181_350 Hb_083380_020--Hb_000181_350 Hb_001511_260 Hb_001511_260 Hb_083380_020--Hb_001511_260 Hb_010368_050--Hb_001951_130 Hb_000127_140 Hb_000127_140 Hb_010368_050--Hb_000127_140 Hb_019181_030 Hb_019181_030 Hb_010368_050--Hb_019181_030 Hb_010407_140 Hb_010407_140 Hb_010368_050--Hb_010407_140 Hb_000392_340 Hb_000392_340 Hb_010368_050--Hb_000392_340 Hb_180343_010 Hb_180343_010 Hb_008147_090--Hb_180343_010 Hb_000029_070 Hb_000029_070 Hb_008147_090--Hb_000029_070 Hb_008147_090--Hb_000127_140 Hb_002392_010 Hb_002392_010 Hb_008147_090--Hb_002392_010 Hb_001195_060 Hb_001195_060 Hb_008147_090--Hb_001195_060 Hb_002184_090 Hb_002184_090 Hb_008147_090--Hb_002184_090 Hb_007101_110--Hb_000181_350 Hb_000365_130 Hb_000365_130 Hb_007101_110--Hb_000365_130 Hb_004965_110 Hb_004965_110 Hb_007101_110--Hb_004965_110 Hb_000062_330 Hb_000062_330 Hb_007101_110--Hb_000062_330 Hb_007101_110--Hb_002184_090 Hb_001951_130--Hb_000127_140 Hb_001951_130--Hb_000392_340 Hb_005054_080 Hb_005054_080 Hb_001951_130--Hb_005054_080 Hb_001951_130--Hb_008147_090 Hb_001951_130--Hb_000062_330 Hb_001663_040 Hb_001663_040 Hb_000181_350--Hb_001663_040 Hb_000057_110 Hb_000057_110 Hb_000181_350--Hb_000057_110 Hb_000200_300 Hb_000200_300 Hb_000181_350--Hb_000200_300 Hb_000684_030 Hb_000684_030 Hb_000181_350--Hb_000684_030 Hb_000181_350--Hb_000062_330 Hb_000803_200 Hb_000803_200 Hb_001511_260--Hb_000803_200 Hb_006326_040 Hb_006326_040 Hb_001511_260--Hb_006326_040 Hb_001511_260--Hb_000392_340 Hb_000832_190 Hb_000832_190 Hb_001511_260--Hb_000832_190 Hb_000359_150 Hb_000359_150 Hb_001511_260--Hb_000359_150 Hb_002303_060 Hb_002303_060 Hb_001511_260--Hb_002303_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.227394 0.110291 0.989987 1.29448 0.159118 0.424707
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.520488 0.930415 0.41246 0.269049 0.534997

CAGE analysis