Hb_001951_130

Information

Type -
Description -
Location Contig1951: 110357-112787
Sequence    

Annotation

kegg
ID vvi:100260697
description coatomer subunit zeta-1-like
nr
ID XP_012072050.1
description PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
swissprot
ID Q940S5
description Coatomer subunit zeta-1 OS=Arabidopsis thaliana GN=At1g60970 PE=2 SV=1
trembl
ID W9RE44
description Uncharacterized protein OS=Morus notabilis GN=L484_010641 PE=4 SV=1
Gene Ontology
ID GO:0006810
description coatomer subunit zeta-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19485: 110972-112858 , PASA_asmbl_19486: 110367-112308
cDNA
(Sanger)
(ID:Location)		 030_I14.ab1: 110972-112858 , 032_G10.ab1: 110996-112858

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001951_130 0.0 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
2 Hb_000127_140 0.0794627379 - - transporter-related family protein [Populus trichocarpa]
3 Hb_010368_050 0.0817405014 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
4 Hb_000392_340 0.0825746692 - - PREDICTED: vacuolar protein sorting-associated protein 29 [Jatropha curcas]
5 Hb_005054_080 0.0985717681 transcription factor TF Family: LIM Pollen-specific protein SF3, putative [Ricinus communis]
6 Hb_008147_090 0.1082506894 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000062_330 0.1083259528 - - unknown [Lotus japonicus]
8 Hb_004093_020 0.1091406344 - - Calcium-binding EF-hand family protein [Theobroma cacao]
9 Hb_004223_050 0.1110905866 - - hexokinase [Manihot esculenta]
10 Hb_002184_090 0.115265646 - - DNA binding protein, putative [Ricinus communis]
11 Hb_000768_210 0.115641703 - - PREDICTED: uncharacterized protein LOC105632522 [Jatropha curcas]
12 Hb_083380_020 0.1180634631 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
13 Hb_004032_030 0.1192083425 - - PREDICTED: RNA-binding protein 24-like isoform X1 [Populus euphratica]
14 Hb_001195_060 0.1206743971 - - Protein yrdA, putative [Ricinus communis]
15 Hb_001377_450 0.1217603692 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 2 isoform X1 [Jatropha curcas]
16 Hb_000217_020 0.1224568848 - - AMME syndrome candidateprotein 1 protein, putative [Ricinus communis]
17 Hb_004176_070 0.1229789598 - - PREDICTED: SPX and EXS domain-containing protein 1-like isoform X1 [Jatropha curcas]
18 Hb_000832_190 0.1231801616 - - Rab3 [Hevea brasiliensis]
19 Hb_007894_010 0.1232938714 - - PREDICTED: uncharacterized protein LOC105632963 [Jatropha curcas]
20 Hb_012796_020 0.1237002508 - - PREDICTED: ADP-ribosylation factor 1 [Prunus mume]

Gene co-expression network

sample Hb_001951_130 Hb_001951_130 Hb_000127_140 Hb_000127_140 Hb_001951_130--Hb_000127_140 Hb_010368_050 Hb_010368_050 Hb_001951_130--Hb_010368_050 Hb_000392_340 Hb_000392_340 Hb_001951_130--Hb_000392_340 Hb_005054_080 Hb_005054_080 Hb_001951_130--Hb_005054_080 Hb_008147_090 Hb_008147_090 Hb_001951_130--Hb_008147_090 Hb_000062_330 Hb_000062_330 Hb_001951_130--Hb_000062_330 Hb_007894_010 Hb_007894_010 Hb_000127_140--Hb_007894_010 Hb_000127_140--Hb_008147_090 Hb_001195_060 Hb_001195_060 Hb_000127_140--Hb_001195_060 Hb_000666_100 Hb_000666_100 Hb_000127_140--Hb_000666_100 Hb_002184_090 Hb_002184_090 Hb_000127_140--Hb_002184_090 Hb_010368_050--Hb_000127_140 Hb_019181_030 Hb_019181_030 Hb_010368_050--Hb_019181_030 Hb_010407_140 Hb_010407_140 Hb_010368_050--Hb_010407_140 Hb_010368_050--Hb_000392_340 Hb_083380_020 Hb_083380_020 Hb_010368_050--Hb_083380_020 Hb_000392_340--Hb_005054_080 Hb_002681_200 Hb_002681_200 Hb_000392_340--Hb_002681_200 Hb_000392_340--Hb_000127_140 Hb_180343_010 Hb_180343_010 Hb_000392_340--Hb_180343_010 Hb_000832_190 Hb_000832_190 Hb_000392_340--Hb_000832_190 Hb_004032_030 Hb_004032_030 Hb_005054_080--Hb_004032_030 Hb_002298_030 Hb_002298_030 Hb_005054_080--Hb_002298_030 Hb_005695_120 Hb_005695_120 Hb_005054_080--Hb_005695_120 Hb_000608_050 Hb_000608_050 Hb_005054_080--Hb_000608_050 Hb_005765_050 Hb_005765_050 Hb_005054_080--Hb_005765_050 Hb_008147_090--Hb_180343_010 Hb_000029_070 Hb_000029_070 Hb_008147_090--Hb_000029_070 Hb_002392_010 Hb_002392_010 Hb_008147_090--Hb_002392_010 Hb_008147_090--Hb_001195_060 Hb_008147_090--Hb_002184_090 Hb_000244_170 Hb_000244_170 Hb_000062_330--Hb_000244_170 Hb_007811_040 Hb_007811_040 Hb_000062_330--Hb_007811_040 Hb_002687_120 Hb_002687_120 Hb_000062_330--Hb_002687_120 Hb_000062_330--Hb_000832_190 Hb_000890_130 Hb_000890_130 Hb_000062_330--Hb_000890_130 Hb_000062_330--Hb_001195_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.5296 7.09273 66.0119 88.4021 23.9424 32.4368
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
59.6989 53.8157 40.623 27.5577 30.8114

CAGE analysis