Hb_001511_260

Information

Type -
Description -
Location Contig1511: 290797-292891
Sequence    

Annotation

kegg
ID rcu:RCOM_0838150
description tryptophan biosynthesis protein, putative (EC:5.3.1.24)
nr
ID XP_002528298.1
description tryptophan biosynthesis protein, putative [Ricinus communis]
swissprot
ID Q42440
description N-(5'-phosphoribosyl)anthranilate isomerase 1, chloroplastic OS=Arabidopsis thaliana GN=PAI1 PE=2 SV=1
trembl
ID B9SQM9
description Tryptophan biosynthesis protein, putative OS=Ricinus communis GN=RCOM_0838150 PE=3 SV=1
Gene Ontology
ID GO:0004640
description n-(5 -phosphoribosyl)anthranilate isomerase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12789: 290623-291921 , PASA_asmbl_12790: 292006-292804
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001511_260 0.0 - - tryptophan biosynthesis protein, putative [Ricinus communis]
2 Hb_000803_200 0.0947271339 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
3 Hb_006326_040 0.1008207977 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000392_340 0.1010905675 - - PREDICTED: vacuolar protein sorting-associated protein 29 [Jatropha curcas]
5 Hb_000832_190 0.1011263965 - - Rab3 [Hevea brasiliensis]
6 Hb_000359_150 0.1094738298 - - PREDICTED: protein Mpv17-like isoform X1 [Jatropha curcas]
7 Hb_002303_060 0.1128058134 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000429_040 0.1144482471 - - PREDICTED: chaperone protein dnaJ 6 [Vitis vinifera]
9 Hb_003582_070 0.1145602353 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001377_450 0.11588316 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 2 isoform X1 [Jatropha curcas]
11 Hb_004889_020 0.1160607869 - - PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Jatropha curcas]
12 Hb_001431_080 0.1166869445 - - 40S ribosomal protein S11, putative [Ricinus communis]
13 Hb_000849_130 0.1178779454 - - PREDICTED: adrenodoxin-like protein, mitochondrial [Nelumbo nucifera]
14 Hb_001863_130 0.1186649418 - - hypothetical protein ZEAMMB73_433257, partial [Zea mays]
15 Hb_003605_160 0.11900141 - - PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica]
16 Hb_005054_080 0.1191598597 transcription factor TF Family: LIM Pollen-specific protein SF3, putative [Ricinus communis]
17 Hb_000473_020 0.1197571951 - - expressed protein, putative [Ricinus communis]
18 Hb_004984_030 0.1198937636 - - protein with unknown function [Ricinus communis]
19 Hb_000676_390 0.1204626981 - - PREDICTED: protein FMP32, mitochondrial [Jatropha curcas]
20 Hb_083380_020 0.1204922866 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]

Gene co-expression network

sample Hb_001511_260 Hb_001511_260 Hb_000803_200 Hb_000803_200 Hb_001511_260--Hb_000803_200 Hb_006326_040 Hb_006326_040 Hb_001511_260--Hb_006326_040 Hb_000392_340 Hb_000392_340 Hb_001511_260--Hb_000392_340 Hb_000832_190 Hb_000832_190 Hb_001511_260--Hb_000832_190 Hb_000359_150 Hb_000359_150 Hb_001511_260--Hb_000359_150 Hb_002303_060 Hb_002303_060 Hb_001511_260--Hb_002303_060 Hb_000849_130 Hb_000849_130 Hb_000803_200--Hb_000849_130 Hb_000803_200--Hb_006326_040 Hb_055062_020 Hb_055062_020 Hb_000803_200--Hb_055062_020 Hb_007113_070 Hb_007113_070 Hb_000803_200--Hb_007113_070 Hb_000045_310 Hb_000045_310 Hb_000803_200--Hb_000045_310 Hb_001931_010 Hb_001931_010 Hb_006326_040--Hb_001931_010 Hb_008071_020 Hb_008071_020 Hb_006326_040--Hb_008071_020 Hb_004889_020 Hb_004889_020 Hb_006326_040--Hb_004889_020 Hb_000505_130 Hb_000505_130 Hb_006326_040--Hb_000505_130 Hb_000566_120 Hb_000566_120 Hb_006326_040--Hb_000566_120 Hb_028396_010 Hb_028396_010 Hb_006326_040--Hb_028396_010 Hb_005054_080 Hb_005054_080 Hb_000392_340--Hb_005054_080 Hb_002681_200 Hb_002681_200 Hb_000392_340--Hb_002681_200 Hb_001951_130 Hb_001951_130 Hb_000392_340--Hb_001951_130 Hb_000127_140 Hb_000127_140 Hb_000392_340--Hb_000127_140 Hb_180343_010 Hb_180343_010 Hb_000392_340--Hb_180343_010 Hb_000392_340--Hb_000832_190 Hb_004984_030 Hb_004984_030 Hb_000832_190--Hb_004984_030 Hb_000429_040 Hb_000429_040 Hb_000832_190--Hb_000429_040 Hb_004041_020 Hb_004041_020 Hb_000832_190--Hb_004041_020 Hb_000926_200 Hb_000926_200 Hb_000832_190--Hb_000926_200 Hb_004965_110 Hb_004965_110 Hb_000832_190--Hb_004965_110 Hb_000413_240 Hb_000413_240 Hb_000832_190--Hb_000413_240 Hb_000261_160 Hb_000261_160 Hb_000359_150--Hb_000261_160 Hb_002171_060 Hb_002171_060 Hb_000359_150--Hb_002171_060 Hb_001016_150 Hb_001016_150 Hb_000359_150--Hb_001016_150 Hb_000599_260 Hb_000599_260 Hb_000359_150--Hb_000599_260 Hb_000690_190 Hb_000690_190 Hb_000359_150--Hb_000690_190 Hb_000359_150--Hb_004041_020 Hb_005269_080 Hb_005269_080 Hb_002303_060--Hb_005269_080 Hb_001053_140 Hb_001053_140 Hb_002303_060--Hb_001053_140 Hb_000189_240 Hb_000189_240 Hb_002303_060--Hb_000189_240 Hb_002314_010 Hb_002314_010 Hb_002303_060--Hb_002314_010 Hb_003605_160 Hb_003605_160 Hb_002303_060--Hb_003605_160 Hb_000107_300 Hb_000107_300 Hb_002303_060--Hb_000107_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.09833 0.503432 2.67479 3.13166 0.419988 1.39556
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.83586 3.66849 2.048 0.952658 0.956166

CAGE analysis