Hb_003001_090

Information

Type -
Description -
Location Contig3001: 95242-98107
Sequence    

Annotation

kegg
ID vvi:100259020
description uncharacterized LOC100259020
nr
ID XP_012085064.1
description PREDICTED: uncharacterized protein LOC105644365 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JR49
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17515 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31667: 87130-94306 , PASA_asmbl_31669: 97372-97506
cDNA
(Sanger)
(ID:Location)		 037_M08.ab1: 87130-94306

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003001_090 0.0 - - PREDICTED: uncharacterized protein LOC105644365 [Jatropha curcas]
2 Hb_000916_070 0.1125265063 - - PREDICTED: sister chromatid cohesion protein DCC1-like [Jatropha curcas]
3 Hb_007017_080 0.1233260965 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
4 Hb_001124_070 0.1248610495 - - Serine/threonine-protein kinase ULK4 [Gossypium arboreum]
5 Hb_002960_150 0.1252791125 - - hypothetical protein CISIN_1g029215mg [Citrus sinensis]
6 Hb_010381_010 0.126243603 - - WD-repeat protein, putative [Ricinus communis]
7 Hb_000227_190 0.1289222011 - - PREDICTED: mitogen-activated protein kinase kinase kinase NPK1 isoform X1 [Jatropha curcas]
8 Hb_010812_070 0.1318241402 - - PREDICTED: LOW QUALITY PROTEIN: protein NETWORKED 4A [Jatropha curcas]
9 Hb_000062_330 0.1322625028 - - unknown [Lotus japonicus]
10 Hb_000622_130 0.1333223274 - - PREDICTED: tubulin gamma-1 chain [Vitis vinifera]
11 Hb_010810_010 0.1354294566 - - PREDICTED: plastidic glucose transporter 4 [Jatropha curcas]
12 Hb_001482_050 0.1370486236 - - COR413-PM2, putative [Ricinus communis]
13 Hb_010577_030 0.1374674215 - - PREDICTED: putative cyclin-B3-1 isoform X1 [Jatropha curcas]
14 Hb_006570_160 0.1448396325 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
15 Hb_007850_030 0.1468079331 - - PREDICTED: uncharacterized protein LOC105640669 [Jatropha curcas]
16 Hb_039021_010 0.1487480842 transcription factor TF Family: B3 hypothetical protein RCOM_0465210 [Ricinus communis]
17 Hb_011282_060 0.1492857505 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase 1 [Jatropha curcas]
18 Hb_011930_150 0.1524594653 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
19 Hb_001008_200 0.152509024 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC103961552 [Pyrus x bretschneideri]
20 Hb_124373_010 0.1533910855 - - PREDICTED: BRCA1-A complex subunit BRE isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003001_090 Hb_003001_090 Hb_000916_070 Hb_000916_070 Hb_003001_090--Hb_000916_070 Hb_007017_080 Hb_007017_080 Hb_003001_090--Hb_007017_080 Hb_001124_070 Hb_001124_070 Hb_003001_090--Hb_001124_070 Hb_002960_150 Hb_002960_150 Hb_003001_090--Hb_002960_150 Hb_010381_010 Hb_010381_010 Hb_003001_090--Hb_010381_010 Hb_000227_190 Hb_000227_190 Hb_003001_090--Hb_000227_190 Hb_000916_070--Hb_002960_150 Hb_000622_130 Hb_000622_130 Hb_000916_070--Hb_000622_130 Hb_067130_010 Hb_067130_010 Hb_000916_070--Hb_067130_010 Hb_124373_010 Hb_124373_010 Hb_000916_070--Hb_124373_010 Hb_010368_050 Hb_010368_050 Hb_000916_070--Hb_010368_050 Hb_010577_030 Hb_010577_030 Hb_007017_080--Hb_010577_030 Hb_007017_080--Hb_000227_190 Hb_007017_080--Hb_002960_150 Hb_001799_030 Hb_001799_030 Hb_007017_080--Hb_001799_030 Hb_001085_260 Hb_001085_260 Hb_007017_080--Hb_001085_260 Hb_012258_010 Hb_012258_010 Hb_007017_080--Hb_012258_010 Hb_001124_070--Hb_010577_030 Hb_000345_510 Hb_000345_510 Hb_001124_070--Hb_000345_510 Hb_001124_070--Hb_007017_080 Hb_006132_110 Hb_006132_110 Hb_001124_070--Hb_006132_110 Hb_003849_130 Hb_003849_130 Hb_001124_070--Hb_003849_130 Hb_002960_150--Hb_001085_260 Hb_002960_150--Hb_124373_010 Hb_002960_150--Hb_000622_130 Hb_002960_150--Hb_010368_050 Hb_161568_010 Hb_161568_010 Hb_010381_010--Hb_161568_010 Hb_003119_090 Hb_003119_090 Hb_010381_010--Hb_003119_090 Hb_000836_300 Hb_000836_300 Hb_010381_010--Hb_000836_300 Hb_007786_030 Hb_007786_030 Hb_010381_010--Hb_007786_030 Hb_004096_160 Hb_004096_160 Hb_010381_010--Hb_004096_160 Hb_000622_200 Hb_000622_200 Hb_010381_010--Hb_000622_200 Hb_005695_120 Hb_005695_120 Hb_000227_190--Hb_005695_120 Hb_000227_190--Hb_010577_030 Hb_005054_080 Hb_005054_080 Hb_000227_190--Hb_005054_080 Hb_000227_190--Hb_000916_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.667831 0.434985 2.32547 2.54203 0.946297 0.499094
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.0061 0.857529 0.994943 0.902868 0.277058

CAGE analysis