Hb_000622_200

Information

Type -
Description -
Location Contig622: 168877-172926
Sequence    

Annotation

kegg
ID rcu:RCOM_1617340
description aldose 1-epimerase, putative
nr
ID XP_002511956.1
description aldose 1-epimerase, putative [Ricinus communis]
swissprot
ID Q40784
description Putative glucose-6-phosphate 1-epimerase OS=Cenchrus ciliaris PE=2 SV=1
trembl
ID B9RE17
description Aldose 1-epimerase, putative OS=Ricinus communis GN=RCOM_1617340 PE=4 SV=1
Gene Ontology
ID GO:0016853
description glucose-6-phosphate 1-epimerase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51570: 168954-172572
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000622_200 0.0 - - aldose 1-epimerase, putative [Ricinus communis]
2 Hb_000580_100 0.1069066003 - - PREDICTED: uncharacterized protein LOC105643133 isoform X1 [Jatropha curcas]
3 Hb_010381_010 0.1118873405 - - WD-repeat protein, putative [Ricinus communis]
4 Hb_001482_050 0.1143605408 - - COR413-PM2, putative [Ricinus communis]
5 Hb_007850_030 0.1164419228 - - PREDICTED: uncharacterized protein LOC105640669 [Jatropha curcas]
6 Hb_016734_080 0.1265548517 - - PREDICTED: pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2 [Jatropha curcas]
7 Hb_039021_010 0.1286332378 transcription factor TF Family: B3 hypothetical protein RCOM_0465210 [Ricinus communis]
8 Hb_133004_010 0.1289071624 - - PREDICTED: cyclin-D3-3 [Jatropha curcas]
9 Hb_000836_300 0.1305822638 - - caax prenyl protease ste24, putative [Ricinus communis]
10 Hb_004079_130 0.1324462139 - - PREDICTED: uncharacterized protein LOC105637708 [Jatropha curcas]
11 Hb_010789_020 0.1344934278 - - ubiquitin-conjugating enzyme e2S, putative [Ricinus communis]
12 Hb_011671_480 0.1350810765 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000227_390 0.1358726714 - - PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]
14 Hb_004096_160 0.1377393489 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
15 Hb_001279_190 0.1382453582 - - PREDICTED: uncharacterized membrane protein At3g27390 isoform X1 [Jatropha curcas]
16 Hb_000029_190 0.14131273 - - hypothetical protein CISIN_1g025338mg [Citrus sinensis]
17 Hb_005144_210 0.1413644836 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000830_020 0.141929846 - - PREDICTED: 7-methylguanosine phosphate-specific 5'-nucleotidase A isoform X2 [Jatropha curcas]
19 Hb_001191_080 0.14237244 - - protein with unknown function [Ricinus communis]
20 Hb_004228_120 0.1437834492 - - hypothetical protein POPTR_0013s02080g [Populus trichocarpa]

Gene co-expression network

sample Hb_000622_200 Hb_000622_200 Hb_000580_100 Hb_000580_100 Hb_000622_200--Hb_000580_100 Hb_010381_010 Hb_010381_010 Hb_000622_200--Hb_010381_010 Hb_001482_050 Hb_001482_050 Hb_000622_200--Hb_001482_050 Hb_007850_030 Hb_007850_030 Hb_000622_200--Hb_007850_030 Hb_016734_080 Hb_016734_080 Hb_000622_200--Hb_016734_080 Hb_039021_010 Hb_039021_010 Hb_000622_200--Hb_039021_010 Hb_000580_100--Hb_039021_010 Hb_005245_120 Hb_005245_120 Hb_000580_100--Hb_005245_120 Hb_000913_040 Hb_000913_040 Hb_000580_100--Hb_000913_040 Hb_004117_190 Hb_004117_190 Hb_000580_100--Hb_004117_190 Hb_004079_130 Hb_004079_130 Hb_000580_100--Hb_004079_130 Hb_161568_010 Hb_161568_010 Hb_010381_010--Hb_161568_010 Hb_003119_090 Hb_003119_090 Hb_010381_010--Hb_003119_090 Hb_000836_300 Hb_000836_300 Hb_010381_010--Hb_000836_300 Hb_007786_030 Hb_007786_030 Hb_010381_010--Hb_007786_030 Hb_004096_160 Hb_004096_160 Hb_010381_010--Hb_004096_160 Hb_001482_050--Hb_004079_130 Hb_001482_050--Hb_007850_030 Hb_000260_470 Hb_000260_470 Hb_001482_050--Hb_000260_470 Hb_133004_010 Hb_133004_010 Hb_001482_050--Hb_133004_010 Hb_000227_390 Hb_000227_390 Hb_001482_050--Hb_000227_390 Hb_001660_100 Hb_001660_100 Hb_001482_050--Hb_001660_100 Hb_002693_030 Hb_002693_030 Hb_007850_030--Hb_002693_030 Hb_053709_050 Hb_053709_050 Hb_007850_030--Hb_053709_050 Hb_001633_090 Hb_001633_090 Hb_007850_030--Hb_001633_090 Hb_004994_210 Hb_004994_210 Hb_007850_030--Hb_004994_210 Hb_007850_030--Hb_000227_390 Hb_001221_110 Hb_001221_110 Hb_016734_080--Hb_001221_110 Hb_000359_040 Hb_000359_040 Hb_016734_080--Hb_000359_040 Hb_001357_310 Hb_001357_310 Hb_016734_080--Hb_001357_310 Hb_010775_030 Hb_010775_030 Hb_016734_080--Hb_010775_030 Hb_004096_180 Hb_004096_180 Hb_016734_080--Hb_004096_180 Hb_002232_480 Hb_002232_480 Hb_016734_080--Hb_002232_480 Hb_005144_210 Hb_005144_210 Hb_039021_010--Hb_005144_210 Hb_039021_010--Hb_000836_300 Hb_039021_010--Hb_004079_130 Hb_003050_260 Hb_003050_260 Hb_039021_010--Hb_003050_260 Hb_000617_310 Hb_000617_310 Hb_039021_010--Hb_000617_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.22311 4.81433 10.3916 9.73027 2.93252 3.90068
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.80504 4.28941 2.77866 6.12862 1.73503

CAGE analysis