Hb_016734_080

Information

Type -
Description -
Location Contig16734: 65491-72051
Sequence    

Annotation

kegg
ID rcu:RCOM_0536700
description phytoene dehydrogenase, putative
nr
ID XP_012070582.1
description PREDICTED: pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2 [Jatropha curcas]
swissprot
ID Q3MHH6
description Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2 OS=Bos taurus GN=PYROXD2 PE=2 SV=1
trembl
ID A0A067KTI8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05153 PE=4 SV=1
Gene Ontology
ID GO:0005739
description pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15474: 65503-65860 , PASA_asmbl_15475: 65942-66739 , PASA_asmbl_15476: 67287-67589 , PASA_asmbl_15477: 67780-70522 , PASA_asmbl_15478: 67842-68010
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_016734_080 0.0 - - PREDICTED: pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2 [Jatropha curcas]
2 Hb_001221_110 0.1071406015 transcription factor TF Family: SWI/SNF-BAF60b hypothetical protein JCGZ_11303 [Jatropha curcas]
3 Hb_000359_040 0.1102509081 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001357_310 0.1110605011 - - PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [Jatropha curcas]
5 Hb_010775_030 0.1138360585 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
6 Hb_004096_180 0.116032737 - - PREDICTED: 14-3-3-like protein A [Jatropha curcas]
7 Hb_002232_480 0.1166385298 - - PREDICTED: telomerase reverse transcriptase [Jatropha curcas]
8 Hb_000948_230 0.1210120698 - - WD-repeat protein, putative [Ricinus communis]
9 Hb_006573_040 0.1217983332 - - DNA binding protein, putative [Ricinus communis]
10 Hb_009767_070 0.1230223506 - - PREDICTED: uncharacterized protein LOC105631980 [Jatropha curcas]
11 Hb_018790_020 0.1232672807 - - protein kinase, putative [Ricinus communis]
12 Hb_000484_130 0.1240305768 - - splicing factor, putative [Ricinus communis]
13 Hb_002056_090 0.124352781 transcription factor TF Family: GNAT PREDICTED: probable acetyltransferase NATA1-like [Jatropha curcas]
14 Hb_000733_200 0.1244880249 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Jatropha curcas]
15 Hb_000096_120 0.1245437679 - - PREDICTED: uncharacterized protein LOC105639993 [Jatropha curcas]
16 Hb_002014_010 0.1246091237 - - Uncharacterized protein isoform 1 [Theobroma cacao]
17 Hb_000173_280 0.1253055024 - - Speckle-type POZ protein, putative [Ricinus communis]
18 Hb_006643_020 0.125606822 - - PREDICTED: uncharacterized protein LOC105628407 [Jatropha curcas]
19 Hb_000327_140 0.1256246603 - - PREDICTED: probable adenylate kinase 6, chloroplastic [Jatropha curcas]
20 Hb_002272_050 0.1256469246 - - microsomal signal peptidase 23 kD subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_016734_080 Hb_016734_080 Hb_001221_110 Hb_001221_110 Hb_016734_080--Hb_001221_110 Hb_000359_040 Hb_000359_040 Hb_016734_080--Hb_000359_040 Hb_001357_310 Hb_001357_310 Hb_016734_080--Hb_001357_310 Hb_010775_030 Hb_010775_030 Hb_016734_080--Hb_010775_030 Hb_004096_180 Hb_004096_180 Hb_016734_080--Hb_004096_180 Hb_002232_480 Hb_002232_480 Hb_016734_080--Hb_002232_480 Hb_001359_050 Hb_001359_050 Hb_001221_110--Hb_001359_050 Hb_000649_110 Hb_000649_110 Hb_001221_110--Hb_000649_110 Hb_000484_130 Hb_000484_130 Hb_001221_110--Hb_000484_130 Hb_000173_280 Hb_000173_280 Hb_001221_110--Hb_000173_280 Hb_164390_010 Hb_164390_010 Hb_001221_110--Hb_164390_010 Hb_024958_010 Hb_024958_010 Hb_001221_110--Hb_024958_010 Hb_004994_010 Hb_004994_010 Hb_000359_040--Hb_004994_010 Hb_001408_140 Hb_001408_140 Hb_000359_040--Hb_001408_140 Hb_001789_060 Hb_001789_060 Hb_000359_040--Hb_001789_060 Hb_001456_060 Hb_001456_060 Hb_000359_040--Hb_001456_060 Hb_002272_050 Hb_002272_050 Hb_000359_040--Hb_002272_050 Hb_000339_040 Hb_000339_040 Hb_000359_040--Hb_000339_040 Hb_001357_310--Hb_010775_030 Hb_007257_060 Hb_007257_060 Hb_001357_310--Hb_007257_060 Hb_002014_010 Hb_002014_010 Hb_001357_310--Hb_002014_010 Hb_012092_050 Hb_012092_050 Hb_001357_310--Hb_012092_050 Hb_000402_150 Hb_000402_150 Hb_001357_310--Hb_000402_150 Hb_006588_060 Hb_006588_060 Hb_001357_310--Hb_006588_060 Hb_002110_160 Hb_002110_160 Hb_010775_030--Hb_002110_160 Hb_010775_030--Hb_002014_010 Hb_010775_030--Hb_006588_060 Hb_000086_420 Hb_000086_420 Hb_010775_030--Hb_000086_420 Hb_171900_090 Hb_171900_090 Hb_010775_030--Hb_171900_090 Hb_002872_030 Hb_002872_030 Hb_004096_180--Hb_002872_030 Hb_000087_060 Hb_000087_060 Hb_004096_180--Hb_000087_060 Hb_000096_120 Hb_000096_120 Hb_004096_180--Hb_000096_120 Hb_002028_210 Hb_002028_210 Hb_004096_180--Hb_002028_210 Hb_004096_180--Hb_000359_040 Hb_027428_010 Hb_027428_010 Hb_004096_180--Hb_027428_010 Hb_004994_240 Hb_004994_240 Hb_002232_480--Hb_004994_240 Hb_011360_050 Hb_011360_050 Hb_002232_480--Hb_011360_050 Hb_000802_090 Hb_000802_090 Hb_002232_480--Hb_000802_090 Hb_001300_010 Hb_001300_010 Hb_002232_480--Hb_001300_010 Hb_001366_090 Hb_001366_090 Hb_002232_480--Hb_001366_090 Hb_007017_040 Hb_007017_040 Hb_002232_480--Hb_007017_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.889725 3.20042 3.92657 3.21025 2.06333 1.87473
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.27187 2.61612 2.27002 2.46518 0.864203

CAGE analysis