Hb_007786_030

Information

Type -
Description -
Location Contig7786: 34369-40239
Sequence    

Annotation

kegg
ID pvu:PHAVU_002G267900g
description hypothetical protein
nr
ID XP_012075285.1
description PREDICTED: ribonucleoside-diphosphate reductase large subunit [Jatropha curcas]
swissprot
ID Q9SJ20
description Ribonucleoside-diphosphate reductase large subunit OS=Arabidopsis thaliana GN=RNR1 PE=1 SV=1
trembl
ID A0A067KGF5
description Ribonucleoside-diphosphate reductase OS=Jatropha curcas GN=JCGZ_09455 PE=3 SV=1
Gene Ontology
ID GO:0004748
description ribonucleoside-diphosphate reductase large subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57876: 34387-40302
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007786_030 0.0 - - PREDICTED: ribonucleoside-diphosphate reductase large subunit [Jatropha curcas]
2 Hb_000331_140 0.1015793476 - - PREDICTED: cycloeucalenol cycloisomerase [Jatropha curcas]
3 Hb_010381_010 0.1097752415 - - WD-repeat protein, putative [Ricinus communis]
4 Hb_005064_010 0.1118833434 - - PREDICTED: kelch repeat-containing protein At3g27220-like [Jatropha curcas]
5 Hb_004064_040 0.1126213424 - - PREDICTED: Down syndrome critical region protein 3 homolog isoform X3 [Jatropha curcas]
6 Hb_010655_020 0.1151125854 - - hypothetical protein CICLE_v10032410mg [Citrus clementina]
7 Hb_000056_160 0.1156685587 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP23 isoform X1 [Jatropha curcas]
8 Hb_000000_330 0.1213192487 - - PREDICTED: uncharacterized protein LOC105633747 [Jatropha curcas]
9 Hb_000836_300 0.1213611257 - - caax prenyl protease ste24, putative [Ricinus communis]
10 Hb_000154_050 0.1215651065 - - CMP-sialic acid transporter, putative [Ricinus communis]
11 Hb_029695_050 0.1257534665 - - PREDICTED: fasciclin-like arabinogalactan protein 1 [Jatropha curcas]
12 Hb_000103_120 0.1293852529 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X2 [Jatropha curcas]
13 Hb_164010_050 0.1298516605 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH1 [Jatropha curcas]
14 Hb_000684_260 0.1307465992 - - PREDICTED: probable DNA helicase MCM8 isoform X2 [Jatropha curcas]
15 Hb_051257_010 0.1319547457 - - -
16 Hb_002676_120 0.1349205648 - - hypothetical protein POPTR_0002s23750g [Populus trichocarpa]
17 Hb_086639_080 0.1353808286 - - conserved hypothetical protein [Ricinus communis]
18 Hb_030736_060 0.1355436729 - - PREDICTED: lysM domain-containing GPI-anchored protein 1 [Jatropha curcas]
19 Hb_134429_010 0.1366575436 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000656_160 0.137562868 - - PREDICTED: transmembrane protein 87A [Jatropha curcas]

Gene co-expression network

sample Hb_007786_030 Hb_007786_030 Hb_000331_140 Hb_000331_140 Hb_007786_030--Hb_000331_140 Hb_010381_010 Hb_010381_010 Hb_007786_030--Hb_010381_010 Hb_005064_010 Hb_005064_010 Hb_007786_030--Hb_005064_010 Hb_004064_040 Hb_004064_040 Hb_007786_030--Hb_004064_040 Hb_010655_020 Hb_010655_020 Hb_007786_030--Hb_010655_020 Hb_000056_160 Hb_000056_160 Hb_007786_030--Hb_000056_160 Hb_004013_030 Hb_004013_030 Hb_000331_140--Hb_004013_030 Hb_000154_050 Hb_000154_050 Hb_000331_140--Hb_000154_050 Hb_001450_020 Hb_001450_020 Hb_000331_140--Hb_001450_020 Hb_074399_010 Hb_074399_010 Hb_000331_140--Hb_074399_010 Hb_006588_160 Hb_006588_160 Hb_000331_140--Hb_006588_160 Hb_161568_010 Hb_161568_010 Hb_010381_010--Hb_161568_010 Hb_003119_090 Hb_003119_090 Hb_010381_010--Hb_003119_090 Hb_000836_300 Hb_000836_300 Hb_010381_010--Hb_000836_300 Hb_004096_160 Hb_004096_160 Hb_010381_010--Hb_004096_160 Hb_000622_200 Hb_000622_200 Hb_010381_010--Hb_000622_200 Hb_005064_010--Hb_004064_040 Hb_005064_010--Hb_000154_050 Hb_001002_060 Hb_001002_060 Hb_005064_010--Hb_001002_060 Hb_001227_120 Hb_001227_120 Hb_005064_010--Hb_001227_120 Hb_003540_050 Hb_003540_050 Hb_005064_010--Hb_003540_050 Hb_000160_070 Hb_000160_070 Hb_005064_010--Hb_000160_070 Hb_004064_040--Hb_000836_300 Hb_000903_010 Hb_000903_010 Hb_004064_040--Hb_000903_010 Hb_004064_040--Hb_000160_070 Hb_004064_040--Hb_000056_160 Hb_004064_040--Hb_001227_120 Hb_000230_180 Hb_000230_180 Hb_010655_020--Hb_000230_180 Hb_002122_010 Hb_002122_010 Hb_010655_020--Hb_002122_010 Hb_000684_260 Hb_000684_260 Hb_010655_020--Hb_000684_260 Hb_010003_010 Hb_010003_010 Hb_010655_020--Hb_010003_010 Hb_051257_010 Hb_051257_010 Hb_010655_020--Hb_051257_010 Hb_000579_070 Hb_000579_070 Hb_000056_160--Hb_000579_070 Hb_003687_210 Hb_003687_210 Hb_000056_160--Hb_003687_210 Hb_000261_210 Hb_000261_210 Hb_000056_160--Hb_000261_210 Hb_000056_160--Hb_000154_050 Hb_000056_160--Hb_001002_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.25026 1.51228 7.92211 8.84409 3.11166 4.42511
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.35862 1.07726 1.51123 3.76075 2.18252

CAGE analysis