Hb_000684_260

Information

Type -
Description -
Location Contig684: 264159-266755
Sequence    

Annotation

kegg
ID rcu:RCOM_0819630
description DNA replication licensing factor MCM8, putative
nr
ID XP_012082282.1
description PREDICTED: probable DNA helicase MCM8 isoform X2 [Jatropha curcas]
swissprot
ID Q9SF37
description Probable DNA helicase MCM8 OS=Arabidopsis thaliana GN=MCM8 PE=2 SV=2
trembl
ID B9SGR4
description DNA helicase OS=Ricinus communis GN=RCOM_0819630 PE=3 SV=1
Gene Ontology
ID GO:0003677
description probable dna helicase mcm8 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000684_260 0.0 - - PREDICTED: probable DNA helicase MCM8 isoform X2 [Jatropha curcas]
2 Hb_051257_010 0.1148115863 - - -
3 Hb_008566_040 0.1255976854 - - PREDICTED: uncharacterized protein LOC105647590 isoform X1 [Jatropha curcas]
4 Hb_000889_100 0.1276106734 - - PREDICTED: syntaxin-132-like isoform X2 [Sesamum indicum]
5 Hb_002960_150 0.130493293 - - hypothetical protein CISIN_1g029215mg [Citrus sinensis]
6 Hb_007786_030 0.1307465992 - - PREDICTED: ribonucleoside-diphosphate reductase large subunit [Jatropha curcas]
7 Hb_000622_350 0.1313729239 - - PREDICTED: protein ABIL1 [Jatropha curcas]
8 Hb_000765_060 0.132182669 - - Alcohol dehydrogenase-like 6 [Glycine soja]
9 Hb_000173_060 0.1342870141 - - Dual specificity protein phosphatase, putative [Ricinus communis]
10 Hb_164010_050 0.1343093051 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH1 [Jatropha curcas]
11 Hb_010655_020 0.1387398159 - - hypothetical protein CICLE_v10032410mg [Citrus clementina]
12 Hb_004567_010 0.1446997359 - - PREDICTED: ER lumen protein-retaining receptor [Jatropha curcas]
13 Hb_004064_040 0.1458446242 - - PREDICTED: Down syndrome critical region protein 3 homolog isoform X3 [Jatropha curcas]
14 Hb_004126_040 0.1459272408 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000072_300 0.1461843194 - - PREDICTED: probable galacturonosyltransferase 9 [Jatropha curcas]
16 Hb_000094_290 0.1471524897 - - PREDICTED: outer envelope pore protein 24B, chloroplastic-like [Jatropha curcas]
17 Hb_019181_030 0.1477384291 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 6-like [Pyrus x bretschneideri]
18 Hb_000152_190 0.1486674701 - - PREDICTED: K(+) efflux antiporter 5 [Jatropha curcas]
19 Hb_010368_050 0.1487171203 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
20 Hb_005064_010 0.1487889453 - - PREDICTED: kelch repeat-containing protein At3g27220-like [Jatropha curcas]

Gene co-expression network

sample Hb_000684_260 Hb_000684_260 Hb_051257_010 Hb_051257_010 Hb_000684_260--Hb_051257_010 Hb_008566_040 Hb_008566_040 Hb_000684_260--Hb_008566_040 Hb_000889_100 Hb_000889_100 Hb_000684_260--Hb_000889_100 Hb_002960_150 Hb_002960_150 Hb_000684_260--Hb_002960_150 Hb_007786_030 Hb_007786_030 Hb_000684_260--Hb_007786_030 Hb_000622_350 Hb_000622_350 Hb_000684_260--Hb_000622_350 Hb_164010_050 Hb_164010_050 Hb_051257_010--Hb_164010_050 Hb_051257_010--Hb_000889_100 Hb_134429_010 Hb_134429_010 Hb_051257_010--Hb_134429_010 Hb_000094_290 Hb_000094_290 Hb_051257_010--Hb_000094_290 Hb_010003_010 Hb_010003_010 Hb_051257_010--Hb_010003_010 Hb_000765_060 Hb_000765_060 Hb_008566_040--Hb_000765_060 Hb_003935_060 Hb_003935_060 Hb_008566_040--Hb_003935_060 Hb_000173_060 Hb_000173_060 Hb_008566_040--Hb_000173_060 Hb_008566_040--Hb_002960_150 Hb_008566_040--Hb_000622_350 Hb_017014_010 Hb_017014_010 Hb_000889_100--Hb_017014_010 Hb_000035_220 Hb_000035_220 Hb_000889_100--Hb_000035_220 Hb_000889_100--Hb_164010_050 Hb_000889_100--Hb_000622_350 Hb_000889_100--Hb_000094_290 Hb_000916_070 Hb_000916_070 Hb_002960_150--Hb_000916_070 Hb_001085_260 Hb_001085_260 Hb_002960_150--Hb_001085_260 Hb_124373_010 Hb_124373_010 Hb_002960_150--Hb_124373_010 Hb_007017_080 Hb_007017_080 Hb_002960_150--Hb_007017_080 Hb_000622_130 Hb_000622_130 Hb_002960_150--Hb_000622_130 Hb_010368_050 Hb_010368_050 Hb_002960_150--Hb_010368_050 Hb_000331_140 Hb_000331_140 Hb_007786_030--Hb_000331_140 Hb_010381_010 Hb_010381_010 Hb_007786_030--Hb_010381_010 Hb_005064_010 Hb_005064_010 Hb_007786_030--Hb_005064_010 Hb_004064_040 Hb_004064_040 Hb_007786_030--Hb_004064_040 Hb_010655_020 Hb_010655_020 Hb_007786_030--Hb_010655_020 Hb_000056_160 Hb_000056_160 Hb_007786_030--Hb_000056_160 Hb_000622_350--Hb_000173_060 Hb_002660_110 Hb_002660_110 Hb_000622_350--Hb_002660_110 Hb_004126_040 Hb_004126_040 Hb_000622_350--Hb_004126_040 Hb_000622_350--Hb_000094_290 Hb_000074_100 Hb_000074_100 Hb_000622_350--Hb_000074_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.161107 0.0847134 0.686355 1.07499 0.228881 0.418915
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.171117 0.242309 0.151267 0.21518 0.280646

CAGE analysis