Hb_010655_020

Information

Type -
Description -
Location Contig10655: 28748-31001
Sequence    

Annotation

kegg
ID cic:CICLE_v10032410mg
description hypothetical protein
nr
ID XP_006437236.1
description hypothetical protein CICLE_v10032410mg [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4TKY9
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032410mg PE=4 SV=1
Gene Ontology
ID GO:0005773
description cycloartenol synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02041: 28764-29056 , PASA_asmbl_02042: 29213-29835
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010655_020 0.0 - - hypothetical protein CICLE_v10032410mg [Citrus clementina]
2 Hb_007786_030 0.1151125854 - - PREDICTED: ribonucleoside-diphosphate reductase large subunit [Jatropha curcas]
3 Hb_000230_180 0.1249437281 - - prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
4 Hb_002122_010 0.1361319547 - - -
5 Hb_000684_260 0.1387398159 - - PREDICTED: probable DNA helicase MCM8 isoform X2 [Jatropha curcas]
6 Hb_010003_010 0.1435871842 - - PREDICTED: uncharacterized protein LOC105630174 isoform X2 [Jatropha curcas]
7 Hb_051257_010 0.146202931 - - -
8 Hb_134429_010 0.1512589073 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005170_010 0.152227334 - - -
10 Hb_000056_160 0.158540857 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP23 isoform X1 [Jatropha curcas]
11 Hb_002611_020 0.1633446914 - - PREDICTED: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like [Populus euphratica]
12 Hb_086022_010 0.1652784203 - - PREDICTED: succinate dehydrogenase assembly factor 1 homolog, mitochondrial [Nicotiana tomentosiformis]
13 Hb_000077_290 0.1654656988 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000889_100 0.1663856488 - - PREDICTED: syntaxin-132-like isoform X2 [Sesamum indicum]
15 Hb_006810_030 0.1664413776 - - Uncharacterized protein isoform 1 [Theobroma cacao]
16 Hb_070469_010 0.1677074151 - - hypothetical protein POPTR_0002s21850g [Populus trichocarpa]
17 Hb_003687_210 0.1689708063 - - PREDICTED: malate dehydrogenase [Populus euphratica]
18 Hb_086639_080 0.1717589108 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002498_050 0.1729320245 - - PREDICTED: aspartic proteinase-like [Jatropha curcas]
20 Hb_002217_380 0.1731850804 - - PREDICTED: uncharacterized protein LOC105643567 [Jatropha curcas]

Gene co-expression network

sample Hb_010655_020 Hb_010655_020 Hb_007786_030 Hb_007786_030 Hb_010655_020--Hb_007786_030 Hb_000230_180 Hb_000230_180 Hb_010655_020--Hb_000230_180 Hb_002122_010 Hb_002122_010 Hb_010655_020--Hb_002122_010 Hb_000684_260 Hb_000684_260 Hb_010655_020--Hb_000684_260 Hb_010003_010 Hb_010003_010 Hb_010655_020--Hb_010003_010 Hb_051257_010 Hb_051257_010 Hb_010655_020--Hb_051257_010 Hb_000331_140 Hb_000331_140 Hb_007786_030--Hb_000331_140 Hb_010381_010 Hb_010381_010 Hb_007786_030--Hb_010381_010 Hb_005064_010 Hb_005064_010 Hb_007786_030--Hb_005064_010 Hb_004064_040 Hb_004064_040 Hb_007786_030--Hb_004064_040 Hb_000056_160 Hb_000056_160 Hb_007786_030--Hb_000056_160 Hb_002611_020 Hb_002611_020 Hb_000230_180--Hb_002611_020 Hb_005170_010 Hb_005170_010 Hb_000230_180--Hb_005170_010 Hb_075764_010 Hb_075764_010 Hb_000230_180--Hb_075764_010 Hb_086639_080 Hb_086639_080 Hb_000230_180--Hb_086639_080 Hb_002498_050 Hb_002498_050 Hb_000230_180--Hb_002498_050 Hb_000696_010 Hb_000696_010 Hb_000230_180--Hb_000696_010 Hb_002122_010--Hb_002611_020 Hb_002122_010--Hb_000230_180 Hb_002122_010--Hb_075764_010 Hb_001191_110 Hb_001191_110 Hb_002122_010--Hb_001191_110 Hb_002122_010--Hb_000696_010 Hb_002122_010--Hb_010003_010 Hb_000684_260--Hb_051257_010 Hb_008566_040 Hb_008566_040 Hb_000684_260--Hb_008566_040 Hb_000889_100 Hb_000889_100 Hb_000684_260--Hb_000889_100 Hb_002960_150 Hb_002960_150 Hb_000684_260--Hb_002960_150 Hb_000684_260--Hb_007786_030 Hb_000622_350 Hb_000622_350 Hb_000684_260--Hb_000622_350 Hb_010003_010--Hb_000889_100 Hb_000094_290 Hb_000094_290 Hb_010003_010--Hb_000094_290 Hb_000077_290 Hb_000077_290 Hb_010003_010--Hb_000077_290 Hb_010003_010--Hb_000230_180 Hb_010003_010--Hb_051257_010 Hb_010003_010--Hb_005170_010 Hb_164010_050 Hb_164010_050 Hb_051257_010--Hb_164010_050 Hb_051257_010--Hb_000889_100 Hb_134429_010 Hb_134429_010 Hb_051257_010--Hb_134429_010 Hb_051257_010--Hb_000094_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.96993 3.42595 22.0078 35.4487 14.0635 24.7786
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.10574 3.41082 4.47331 8.76042 7.64257

CAGE analysis