Hb_008566_040

Information

Type -
Description -
Location Contig8566: 46799-49602
Sequence    

Annotation

kegg
ID rcu:RCOM_1430280
description hypothetical protein
nr
ID XP_012089120.1
description PREDICTED: uncharacterized protein LOC105647590 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JL43
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23391 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60629: 46853-48186 , PASA_asmbl_60630: 46798-49406
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008566_040 0.0 - - PREDICTED: uncharacterized protein LOC105647590 isoform X1 [Jatropha curcas]
2 Hb_000765_060 0.0981613011 - - Alcohol dehydrogenase-like 6 [Glycine soja]
3 Hb_003935_060 0.118288571 - - PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 [Jatropha curcas]
4 Hb_000684_260 0.1255976854 - - PREDICTED: probable DNA helicase MCM8 isoform X2 [Jatropha curcas]
5 Hb_000173_060 0.1263922632 - - Dual specificity protein phosphatase, putative [Ricinus communis]
6 Hb_002960_150 0.1280284319 - - hypothetical protein CISIN_1g029215mg [Citrus sinensis]
7 Hb_000622_350 0.1296265849 - - PREDICTED: protein ABIL1 [Jatropha curcas]
8 Hb_000072_300 0.1313682144 - - PREDICTED: probable galacturonosyltransferase 9 [Jatropha curcas]
9 Hb_000300_200 0.1341568584 - - PREDICTED: xylosyltransferase 1 [Jatropha curcas]
10 Hb_000962_070 0.1359198304 - - PREDICTED: probable plastid-lipid-associated protein 13, chloroplastic isoform X2 [Jatropha curcas]
11 Hb_000796_150 0.1372546703 - - PREDICTED: uncharacterized protein LOC105136996 isoform X1 [Populus euphratica]
12 Hb_000359_290 0.1372735605 - - Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative [Ricinus communis]
13 Hb_000181_350 0.138576464 - - PREDICTED: uncharacterized protein LOC105111090 [Populus euphratica]
14 Hb_000920_010 0.1389881851 - - hypothetical protein PRUPE_ppa013940mg [Prunus persica]
15 Hb_012339_010 0.141853427 - - conserved hypothetical protein [Ricinus communis]
16 Hb_010368_050 0.1421510067 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
17 Hb_001250_070 0.1425392681 - - ATP-citrate synthase, putative [Ricinus communis]
18 Hb_001606_060 0.1435588104 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000364_170 0.1442834899 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase CLF [Jatropha curcas]
20 Hb_011926_040 0.1445867964 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_008566_040 Hb_008566_040 Hb_000765_060 Hb_000765_060 Hb_008566_040--Hb_000765_060 Hb_003935_060 Hb_003935_060 Hb_008566_040--Hb_003935_060 Hb_000684_260 Hb_000684_260 Hb_008566_040--Hb_000684_260 Hb_000173_060 Hb_000173_060 Hb_008566_040--Hb_000173_060 Hb_002960_150 Hb_002960_150 Hb_008566_040--Hb_002960_150 Hb_000622_350 Hb_000622_350 Hb_008566_040--Hb_000622_350 Hb_000057_110 Hb_000057_110 Hb_000765_060--Hb_000057_110 Hb_000072_300 Hb_000072_300 Hb_000765_060--Hb_000072_300 Hb_011486_060 Hb_011486_060 Hb_000765_060--Hb_011486_060 Hb_000244_170 Hb_000244_170 Hb_000765_060--Hb_000244_170 Hb_000181_350 Hb_000181_350 Hb_000765_060--Hb_000181_350 Hb_001504_030 Hb_001504_030 Hb_003935_060--Hb_001504_030 Hb_000365_130 Hb_000365_130 Hb_003935_060--Hb_000365_130 Hb_001250_070 Hb_001250_070 Hb_003935_060--Hb_001250_070 Hb_000721_030 Hb_000721_030 Hb_003935_060--Hb_000721_030 Hb_001102_020 Hb_001102_020 Hb_003935_060--Hb_001102_020 Hb_000359_290 Hb_000359_290 Hb_003935_060--Hb_000359_290 Hb_051257_010 Hb_051257_010 Hb_000684_260--Hb_051257_010 Hb_000889_100 Hb_000889_100 Hb_000684_260--Hb_000889_100 Hb_000684_260--Hb_002960_150 Hb_007786_030 Hb_007786_030 Hb_000684_260--Hb_007786_030 Hb_000684_260--Hb_000622_350 Hb_009913_040 Hb_009913_040 Hb_000173_060--Hb_009913_040 Hb_000094_290 Hb_000094_290 Hb_000173_060--Hb_000094_290 Hb_011926_040 Hb_011926_040 Hb_000173_060--Hb_011926_040 Hb_000173_060--Hb_000622_350 Hb_003058_100 Hb_003058_100 Hb_000173_060--Hb_003058_100 Hb_000300_090 Hb_000300_090 Hb_000173_060--Hb_000300_090 Hb_000916_070 Hb_000916_070 Hb_002960_150--Hb_000916_070 Hb_001085_260 Hb_001085_260 Hb_002960_150--Hb_001085_260 Hb_124373_010 Hb_124373_010 Hb_002960_150--Hb_124373_010 Hb_007017_080 Hb_007017_080 Hb_002960_150--Hb_007017_080 Hb_000622_130 Hb_000622_130 Hb_002960_150--Hb_000622_130 Hb_010368_050 Hb_010368_050 Hb_002960_150--Hb_010368_050 Hb_002660_110 Hb_002660_110 Hb_000622_350--Hb_002660_110 Hb_004126_040 Hb_004126_040 Hb_000622_350--Hb_004126_040 Hb_000622_350--Hb_000094_290 Hb_000074_100 Hb_000074_100 Hb_000622_350--Hb_000074_100 Hb_000622_350--Hb_000889_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.00372 1.25818 16.7841 22.6809 4.84847 5.26776
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.66278 5.38934 4.36528 3.48357 9.40803

CAGE analysis