Hb_000300_090

Information

Type -
Description -
Location Contig300: 60301-63424
Sequence    

Annotation

kegg
ID rcu:RCOM_0845190
description catalytic, putative
nr
ID XP_002530948.1
description catalytic, putative [Ricinus communis]
swissprot
ID Q6DBG8
description Probable arabinosyltransferase ARAD1 OS=Arabidopsis thaliana GN=ARAD1 PE=1 SV=1
trembl
ID B9SY79
description Catalytic, putative OS=Ricinus communis GN=RCOM_0845190 PE=4 SV=1
Gene Ontology
ID GO:0016740
description probable arabinosyltransferase arad1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31541: 60300-60427 , PASA_asmbl_31542: 60534-62167 , PASA_asmbl_31544: 62333-63794 , PASA_asmbl_31545: 63285-63542
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000300_090 0.0 - - catalytic, putative [Ricinus communis]
2 Hb_000035_220 0.0878960312 - - PREDICTED: transmembrane 9 superfamily member 8 [Jatropha curcas]
3 Hb_000510_150 0.0955446789 - - PREDICTED: magnesium transporter MRS2-I-like isoform X1 [Jatropha curcas]
4 Hb_014361_060 0.1001102613 - - PREDICTED: probable prolyl 4-hydroxylase 9 [Jatropha curcas]
5 Hb_000094_290 0.1005165189 - - PREDICTED: outer envelope pore protein 24B, chloroplastic-like [Jatropha curcas]
6 Hb_000503_020 0.1008312323 - - PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]
7 Hb_002053_050 0.1017320627 - - Kinesin heavy chain, putative [Ricinus communis]
8 Hb_183086_030 0.1039863504 - - GTPase-activating protein GYP7 [Gossypium arboreum]
9 Hb_022693_130 0.1075876286 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
10 Hb_000665_170 0.1112955883 - - PREDICTED: probable beta-1,3-galactosyltransferase 10 [Jatropha curcas]
11 Hb_003540_080 0.1115504955 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
12 Hb_006006_060 0.1124851178 - - PREDICTED: triacylglycerol lipase 1 isoform X2 [Jatropha curcas]
13 Hb_001157_230 0.1125557066 - - Protein AFR, putative [Ricinus communis]
14 Hb_002837_040 0.1125736042 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
15 Hb_011926_040 0.1146068693 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
16 Hb_008406_180 0.115058153 - - RING/U-box superfamily protein isoform 2 [Theobroma cacao]
17 Hb_008014_040 0.1158476577 - - PREDICTED: uncharacterized protein LOC105649721 [Jatropha curcas]
18 Hb_027445_030 0.1160182887 - - F-box/LRR-repeat protein, putative [Ricinus communis]
19 Hb_033642_060 0.1165224983 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
20 Hb_010984_020 0.1166238276 - - Translation factor GUF1 like, chloroplastic [Glycine soja]

Gene co-expression network

sample Hb_000300_090 Hb_000300_090 Hb_000035_220 Hb_000035_220 Hb_000300_090--Hb_000035_220 Hb_000510_150 Hb_000510_150 Hb_000300_090--Hb_000510_150 Hb_014361_060 Hb_014361_060 Hb_000300_090--Hb_014361_060 Hb_000094_290 Hb_000094_290 Hb_000300_090--Hb_000094_290 Hb_000503_020 Hb_000503_020 Hb_000300_090--Hb_000503_020 Hb_002053_050 Hb_002053_050 Hb_000300_090--Hb_002053_050 Hb_003540_080 Hb_003540_080 Hb_000035_220--Hb_003540_080 Hb_000035_220--Hb_000510_150 Hb_000665_170 Hb_000665_170 Hb_000035_220--Hb_000665_170 Hb_000256_230 Hb_000256_230 Hb_000035_220--Hb_000256_230 Hb_012194_060 Hb_012194_060 Hb_000035_220--Hb_012194_060 Hb_004126_040 Hb_004126_040 Hb_000035_220--Hb_004126_040 Hb_002301_030 Hb_002301_030 Hb_000510_150--Hb_002301_030 Hb_000342_170 Hb_000342_170 Hb_000510_150--Hb_000342_170 Hb_000510_150--Hb_000665_170 Hb_000510_150--Hb_003540_080 Hb_002942_230 Hb_002942_230 Hb_000510_150--Hb_002942_230 Hb_014361_060--Hb_000256_230 Hb_000418_020 Hb_000418_020 Hb_014361_060--Hb_000418_020 Hb_000903_010 Hb_000903_010 Hb_014361_060--Hb_000903_010 Hb_014361_060--Hb_000665_170 Hb_000389_030 Hb_000389_030 Hb_014361_060--Hb_000389_030 Hb_000173_060 Hb_000173_060 Hb_000094_290--Hb_000173_060 Hb_000622_350 Hb_000622_350 Hb_000094_290--Hb_000622_350 Hb_000889_100 Hb_000889_100 Hb_000094_290--Hb_000889_100 Hb_011926_040 Hb_011926_040 Hb_000094_290--Hb_011926_040 Hb_010003_010 Hb_010003_010 Hb_000094_290--Hb_010003_010 Hb_000054_040 Hb_000054_040 Hb_000503_020--Hb_000054_040 Hb_005062_110 Hb_005062_110 Hb_000503_020--Hb_005062_110 Hb_000320_290 Hb_000320_290 Hb_000503_020--Hb_000320_290 Hb_000085_260 Hb_000085_260 Hb_000503_020--Hb_000085_260 Hb_006120_050 Hb_006120_050 Hb_000503_020--Hb_006120_050 Hb_001246_130 Hb_001246_130 Hb_000503_020--Hb_001246_130 Hb_005062_060 Hb_005062_060 Hb_002053_050--Hb_005062_060 Hb_000107_250 Hb_000107_250 Hb_002053_050--Hb_000107_250 Hb_005656_070 Hb_005656_070 Hb_002053_050--Hb_005656_070 Hb_022693_130 Hb_022693_130 Hb_002053_050--Hb_022693_130 Hb_000815_230 Hb_000815_230 Hb_002053_050--Hb_000815_230 Hb_073973_120 Hb_073973_120 Hb_002053_050--Hb_073973_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.39935 0.874579 2.04703 3.66039 0.84574 1.50032
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.602829 0.553356 0.560606 1.14117 2.58174

CAGE analysis