Hb_014361_060

Information

Type -
Description -
Location Contig14361: 41503-45787
Sequence    

Annotation

kegg
ID rcu:RCOM_0396560
description prolyl 4-hydroxylase alpha subunit, putative (EC:1.14.11.2)
nr
ID XP_012079365.1
description PREDICTED: probable prolyl 4-hydroxylase 9 [Jatropha curcas]
swissprot
ID Q8VZJ7
description Probable prolyl 4-hydroxylase 9 OS=Arabidopsis thaliana GN=P4H9 PE=2 SV=1
trembl
ID A0A067KIE5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12506 PE=4 SV=1
Gene Ontology
ID GO:0005506
description probable prolyl 4-hydroxylase 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11449: 41449-45767 , PASA_asmbl_11450: 41498-45747 , PASA_asmbl_11451: 43432-43665
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014361_060 0.0 - - PREDICTED: probable prolyl 4-hydroxylase 9 [Jatropha curcas]
2 Hb_000256_230 0.0846701387 - - PREDICTED: uncharacterized protein LOC105637594 [Jatropha curcas]
3 Hb_000418_020 0.089487791 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
4 Hb_000903_010 0.0911694108 - - hypothetical protein JCGZ_23825 [Jatropha curcas]
5 Hb_000665_170 0.0940475525 - - PREDICTED: probable beta-1,3-galactosyltransferase 10 [Jatropha curcas]
6 Hb_000389_030 0.0984863209 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B [Jatropha curcas]
7 Hb_000300_090 0.1001102613 - - catalytic, putative [Ricinus communis]
8 Hb_005062_110 0.1009225451 - - PREDICTED: transmembrane 9 superfamily member 1 [Jatropha curcas]
9 Hb_003878_200 0.1015916446 - - PREDICTED: V-type proton ATPase subunit D-like [Jatropha curcas]
10 Hb_000622_110 0.1022209157 - - cmp-sialic acid transporter, putative [Ricinus communis]
11 Hb_000503_020 0.1023100751 - - PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]
12 Hb_004126_040 0.1033066694 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003058_100 0.1034528551 - - PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial [Jatropha curcas]
14 Hb_183086_030 0.1037794313 - - GTPase-activating protein GYP7 [Gossypium arboreum]
15 Hb_003209_130 0.1044543669 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
16 Hb_003540_080 0.1047025714 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
17 Hb_001246_130 0.105119514 - - PREDICTED: NAD-dependent malic enzyme 62 kDa isoform, mitochondrial [Jatropha curcas]
18 Hb_002837_040 0.105188621 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
19 Hb_008406_180 0.1071681096 - - RING/U-box superfamily protein isoform 2 [Theobroma cacao]
20 Hb_000035_220 0.108540453 - - PREDICTED: transmembrane 9 superfamily member 8 [Jatropha curcas]

Gene co-expression network

sample Hb_014361_060 Hb_014361_060 Hb_000256_230 Hb_000256_230 Hb_014361_060--Hb_000256_230 Hb_000418_020 Hb_000418_020 Hb_014361_060--Hb_000418_020 Hb_000903_010 Hb_000903_010 Hb_014361_060--Hb_000903_010 Hb_000665_170 Hb_000665_170 Hb_014361_060--Hb_000665_170 Hb_000389_030 Hb_000389_030 Hb_014361_060--Hb_000389_030 Hb_000300_090 Hb_000300_090 Hb_014361_060--Hb_000300_090 Hb_000256_230--Hb_000665_170 Hb_000256_230--Hb_000389_030 Hb_003209_130 Hb_003209_130 Hb_000256_230--Hb_003209_130 Hb_004126_040 Hb_004126_040 Hb_000256_230--Hb_004126_040 Hb_000622_110 Hb_000622_110 Hb_000256_230--Hb_000622_110 Hb_002486_050 Hb_002486_050 Hb_000256_230--Hb_002486_050 Hb_000418_020--Hb_000256_230 Hb_000418_020--Hb_000665_170 Hb_002687_200 Hb_002687_200 Hb_000418_020--Hb_002687_200 Hb_021576_070 Hb_021576_070 Hb_000418_020--Hb_021576_070 Hb_002739_120 Hb_002739_120 Hb_000418_020--Hb_002739_120 Hb_003777_030 Hb_003777_030 Hb_000418_020--Hb_003777_030 Hb_002837_040 Hb_002837_040 Hb_000903_010--Hb_002837_040 Hb_004064_040 Hb_004064_040 Hb_000903_010--Hb_004064_040 Hb_002871_140 Hb_002871_140 Hb_000903_010--Hb_002871_140 Hb_000787_060 Hb_000787_060 Hb_000903_010--Hb_000787_060 Hb_002749_080 Hb_002749_080 Hb_000903_010--Hb_002749_080 Hb_001002_060 Hb_001002_060 Hb_000903_010--Hb_001002_060 Hb_000665_170--Hb_003777_030 Hb_010672_020 Hb_010672_020 Hb_000665_170--Hb_010672_020 Hb_000665_170--Hb_003209_130 Hb_007545_010 Hb_007545_010 Hb_000665_170--Hb_007545_010 Hb_000665_170--Hb_000389_030 Hb_001021_010 Hb_001021_010 Hb_000389_030--Hb_001021_010 Hb_000389_030--Hb_004126_040 Hb_004525_040 Hb_004525_040 Hb_000389_030--Hb_004525_040 Hb_000009_060 Hb_000009_060 Hb_000389_030--Hb_000009_060 Hb_000035_220 Hb_000035_220 Hb_000300_090--Hb_000035_220 Hb_000510_150 Hb_000510_150 Hb_000300_090--Hb_000510_150 Hb_000094_290 Hb_000094_290 Hb_000300_090--Hb_000094_290 Hb_000503_020 Hb_000503_020 Hb_000300_090--Hb_000503_020 Hb_002053_050 Hb_002053_050 Hb_000300_090--Hb_002053_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.0663 6.08673 12.1267 21.3709 7.87424 5.46945
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.10305 3.39108 2.69384 8.75811 13.553

CAGE analysis