Hb_002053_050

Information

Type -
Description -
Location Contig2053: 48842-58451
Sequence    

Annotation

kegg
ID rcu:RCOM_1681390
description Kinesin heavy chain, putative
nr
ID XP_002509638.1
description Kinesin heavy chain, putative [Ricinus communis]
swissprot
ID Q9FZ06
description Armadillo repeat-containing kinesin-like protein 3 OS=Arabidopsis thaliana GN=ARK3 PE=1 SV=1
trembl
ID B9RBV4
description Kinesin-like protein OS=Ricinus communis GN=RCOM_1681390 PE=3 SV=1
Gene Ontology
ID GO:0005871
description armadillo repeat-containing kinesin-like protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21159: 48891-51483 , PASA_asmbl_21160: 48911-51483 , PASA_asmbl_21161: 48911-58133
cDNA
(Sanger)
(ID:Location)		 012_N05.ab1: 49866-51483

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002053_050 0.0 - - Kinesin heavy chain, putative [Ricinus communis]
2 Hb_005062_060 0.0798993598 - - PREDICTED: uncharacterized protein At4g06598-like [Jatropha curcas]
3 Hb_000107_250 0.084286063 - - voltage-gated clc-type chloride channel, putative [Ricinus communis]
4 Hb_005656_070 0.0876703321 - - PREDICTED: cryptochrome DASH, chloroplastic/mitochondrial [Jatropha curcas]
5 Hb_022693_130 0.0892649066 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
6 Hb_000815_230 0.0950335261 - - conserved hypothetical protein [Ricinus communis]
7 Hb_073973_120 0.0953653133 - - zinc finger protein, putative [Ricinus communis]
8 Hb_000922_060 0.096175891 - - kinesin light chain, putative [Ricinus communis]
9 Hb_006006_060 0.0998432503 - - PREDICTED: triacylglycerol lipase 1 isoform X2 [Jatropha curcas]
10 Hb_000300_090 0.1017320627 - - catalytic, putative [Ricinus communis]
11 Hb_003462_060 0.1040546247 - - PREDICTED: ABC transporter G family member 24-like [Jatropha curcas]
12 Hb_000959_300 0.1107965822 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
13 Hb_183086_030 0.1137712981 - - GTPase-activating protein GYP7 [Gossypium arboreum]
14 Hb_002942_230 0.1141027384 - - PREDICTED: long chain base biosynthesis protein 2a [Populus euphratica]
15 Hb_002311_190 0.1141302839 - - PREDICTED: uncharacterized protein LOC105643493 [Jatropha curcas]
16 Hb_000000_310 0.1153423006 - - metalloendopeptidase, putative [Ricinus communis]
17 Hb_001140_180 0.1159330063 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
18 Hb_000529_130 0.1161972875 - - hypothetical protein POPTR_0007s14320g [Populus trichocarpa]
19 Hb_000934_110 0.1170529182 - - PREDICTED: protein trichome berefringence-like 7 [Jatropha curcas]
20 Hb_001279_020 0.1173672515 - - PREDICTED: uncharacterized protein LOC105633240 [Jatropha curcas]

Gene co-expression network

sample Hb_002053_050 Hb_002053_050 Hb_005062_060 Hb_005062_060 Hb_002053_050--Hb_005062_060 Hb_000107_250 Hb_000107_250 Hb_002053_050--Hb_000107_250 Hb_005656_070 Hb_005656_070 Hb_002053_050--Hb_005656_070 Hb_022693_130 Hb_022693_130 Hb_002053_050--Hb_022693_130 Hb_000815_230 Hb_000815_230 Hb_002053_050--Hb_000815_230 Hb_073973_120 Hb_073973_120 Hb_002053_050--Hb_073973_120 Hb_005062_060--Hb_022693_130 Hb_160271_010 Hb_160271_010 Hb_005062_060--Hb_160271_010 Hb_005062_060--Hb_005656_070 Hb_005062_060--Hb_000107_250 Hb_000453_030 Hb_000453_030 Hb_005062_060--Hb_000453_030 Hb_000000_310 Hb_000000_310 Hb_000107_250--Hb_000000_310 Hb_000107_250--Hb_073973_120 Hb_000107_250--Hb_022693_130 Hb_003682_070 Hb_003682_070 Hb_000107_250--Hb_003682_070 Hb_004705_160 Hb_004705_160 Hb_000107_250--Hb_004705_160 Hb_004907_090 Hb_004907_090 Hb_005656_070--Hb_004907_090 Hb_007594_080 Hb_007594_080 Hb_005656_070--Hb_007594_080 Hb_005656_070--Hb_022693_130 Hb_004158_050 Hb_004158_050 Hb_005656_070--Hb_004158_050 Hb_022693_130--Hb_160271_010 Hb_068079_010 Hb_068079_010 Hb_022693_130--Hb_068079_010 Hb_000645_180 Hb_000645_180 Hb_022693_130--Hb_000645_180 Hb_000108_020 Hb_000108_020 Hb_022693_130--Hb_000108_020 Hb_000505_080 Hb_000505_080 Hb_000815_230--Hb_000505_080 Hb_000815_230--Hb_003682_070 Hb_000815_230--Hb_000000_310 Hb_010344_030 Hb_010344_030 Hb_000815_230--Hb_010344_030 Hb_004735_020 Hb_004735_020 Hb_000815_230--Hb_004735_020 Hb_174865_040 Hb_174865_040 Hb_073973_120--Hb_174865_040 Hb_073973_120--Hb_022693_130 Hb_006006_060 Hb_006006_060 Hb_073973_120--Hb_006006_060 Hb_073973_120--Hb_005062_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.51606 5.91523 12.2263 15.575 5.35124 7.44015
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.9802 2.26206 2.96727 3.67409 15.5191

CAGE analysis