Hb_000505_080

Information

Type -
Description -
Location Contig505: 59866-70569
Sequence    

Annotation

kegg
ID rcu:RCOM_0667030
description Inner membrane transport protein yjjL, putative
nr
ID XP_002533670.1
description Inner membrane transport protein yjjL, putative [Ricinus communis]
swissprot
ID Q3E9A0
description Probable anion transporter 6, chloroplastic OS=Arabidopsis thaliana GN=ANTR6 PE=2 SV=1
trembl
ID B9T601
description Inner membrane transport protein yjjL, putative OS=Ricinus communis GN=RCOM_0667030 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable anion transporter chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45998: 61044-70741
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000505_080 0.0 - - Inner membrane transport protein yjjL, putative [Ricinus communis]
2 Hb_000815_230 0.0945472472 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002471_110 0.1290034009 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 28 [Jatropha curcas]
4 Hb_001675_050 0.1306224805 - - PREDICTED: uncharacterized protein LOC105635000 [Jatropha curcas]
5 Hb_010344_030 0.1309244718 - - conserved hypothetical protein [Ricinus communis]
6 Hb_006006_060 0.1331646148 - - PREDICTED: triacylglycerol lipase 1 isoform X2 [Jatropha curcas]
7 Hb_002053_050 0.1334876834 - - Kinesin heavy chain, putative [Ricinus communis]
8 Hb_003053_050 0.1431367686 - - PREDICTED: putative phospholipid-transporting ATPase 8 [Jatropha curcas]
9 Hb_004735_020 0.1436106872 - - PREDICTED: uncharacterized protein LOC105639315 [Jatropha curcas]
10 Hb_010984_020 0.1439217736 - - Translation factor GUF1 like, chloroplastic [Glycine soja]
11 Hb_000977_290 0.1483547173 - - PREDICTED: CMP-sialic acid transporter 2-like isoform X2 [Jatropha curcas]
12 Hb_007192_020 0.1526188069 - - PREDICTED: high-affinity nitrate transporter 3.1-like [Jatropha curcas]
13 Hb_000300_090 0.1527265366 - - catalytic, putative [Ricinus communis]
14 Hb_001396_240 0.1534694224 transcription factor TF Family: Orphans PREDICTED: histidine kinase 3 isoform X1 [Jatropha curcas]
15 Hb_073973_120 0.1544488181 - - zinc finger protein, putative [Ricinus communis]
16 Hb_000062_400 0.1547065025 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005063_080 0.1549421285 - - PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
18 Hb_003462_060 0.1550488649 - - PREDICTED: ABC transporter G family member 24-like [Jatropha curcas]
19 Hb_000934_110 0.1600917531 - - PREDICTED: protein trichome berefringence-like 7 [Jatropha curcas]
20 Hb_000336_200 0.1602688884 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]

Gene co-expression network

sample Hb_000505_080 Hb_000505_080 Hb_000815_230 Hb_000815_230 Hb_000505_080--Hb_000815_230 Hb_002471_110 Hb_002471_110 Hb_000505_080--Hb_002471_110 Hb_001675_050 Hb_001675_050 Hb_000505_080--Hb_001675_050 Hb_010344_030 Hb_010344_030 Hb_000505_080--Hb_010344_030 Hb_006006_060 Hb_006006_060 Hb_000505_080--Hb_006006_060 Hb_002053_050 Hb_002053_050 Hb_000505_080--Hb_002053_050 Hb_000815_230--Hb_002053_050 Hb_003682_070 Hb_003682_070 Hb_000815_230--Hb_003682_070 Hb_000000_310 Hb_000000_310 Hb_000815_230--Hb_000000_310 Hb_000815_230--Hb_010344_030 Hb_004735_020 Hb_004735_020 Hb_000815_230--Hb_004735_020 Hb_003462_060 Hb_003462_060 Hb_002471_110--Hb_003462_060 Hb_000029_110 Hb_000029_110 Hb_002471_110--Hb_000029_110 Hb_001541_100 Hb_001541_100 Hb_002471_110--Hb_001541_100 Hb_012098_150 Hb_012098_150 Hb_002471_110--Hb_012098_150 Hb_000703_290 Hb_000703_290 Hb_002471_110--Hb_000703_290 Hb_001976_060 Hb_001976_060 Hb_001675_050--Hb_001976_060 Hb_003777_250 Hb_003777_250 Hb_001675_050--Hb_003777_250 Hb_012165_020 Hb_012165_020 Hb_001675_050--Hb_012165_020 Hb_001675_050--Hb_000815_230 Hb_001623_080 Hb_001623_080 Hb_001675_050--Hb_001623_080 Hb_010344_030--Hb_006006_060 Hb_005250_010 Hb_005250_010 Hb_010344_030--Hb_005250_010 Hb_000200_350 Hb_000200_350 Hb_010344_030--Hb_000200_350 Hb_000388_150 Hb_000388_150 Hb_010344_030--Hb_000388_150 Hb_010344_030--Hb_004735_020 Hb_010344_030--Hb_003462_060 Hb_006006_060--Hb_000200_350 Hb_022693_130 Hb_022693_130 Hb_006006_060--Hb_022693_130 Hb_006006_060--Hb_000388_150 Hb_011926_040 Hb_011926_040 Hb_006006_060--Hb_011926_040 Hb_010984_020 Hb_010984_020 Hb_006006_060--Hb_010984_020 Hb_005062_060 Hb_005062_060 Hb_002053_050--Hb_005062_060 Hb_000107_250 Hb_000107_250 Hb_002053_050--Hb_000107_250 Hb_005656_070 Hb_005656_070 Hb_002053_050--Hb_005656_070 Hb_002053_050--Hb_022693_130 Hb_073973_120 Hb_073973_120 Hb_002053_050--Hb_073973_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.66245 3.2631 10.7345 15.0173 3.19311 10.164
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.33257 1.39844 2.05312 2.74858 21.9006

CAGE analysis