Hb_012165_020

Information

Type -
Description -
Location Contig12165: 34040-36525
Sequence    

Annotation

kegg
ID pop:POPTR_0005s08030g
description POPTRDRAFT_207518; hypothetical protein
nr
ID XP_006380428.1
description hypothetical protein POPTR_0007s05770g [Populus trichocarpa]
swissprot
ID Q7Z9L3
description Glucan 1,3-beta-glucosidase A OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=exgA PE=1 SV=1
trembl
ID U5G487
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s05770g PE=3 SV=1
Gene Ontology
ID GO:0004553
description probable glucan -beta-glucosidase a isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06591: 34038-36475
cDNA
(Sanger)
(ID:Location)		 019_M05.ab1: 35258-36428

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012165_020 0.0 - - hypothetical protein POPTR_0007s05770g [Populus trichocarpa]
2 Hb_005288_110 0.1352947517 - - PREDICTED: uncharacterized protein LOC105647752 [Jatropha curcas]
3 Hb_000599_230 0.1400506695 - - -
4 Hb_001675_050 0.1455702353 - - PREDICTED: uncharacterized protein LOC105635000 [Jatropha curcas]
5 Hb_007313_100 0.1548203065 desease resistance Gene Name: NB-ARC Disease resistance protein RPS2, putative [Ricinus communis]
6 Hb_002681_080 0.1604578142 - - PREDICTED: uncharacterized protein LOC105633817 isoform X1 [Jatropha curcas]
7 Hb_002276_070 0.1670220233 - - PREDICTED: heat shock protein 83 [Jatropha curcas]
8 Hb_002320_090 0.1713010414 - - PREDICTED: endoglucanase 25-like [Jatropha curcas]
9 Hb_004785_070 0.1727895153 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
10 Hb_137276_010 0.1780614322 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
11 Hb_003777_250 0.1791729398 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming]-like [Jatropha curcas]
12 Hb_002740_190 0.1821278405 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Jatropha curcas]
13 Hb_090530_010 0.1826356384 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
14 Hb_143629_060 0.1843152703 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Jatropha curcas]
15 Hb_001516_050 0.1856389659 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 [Jatropha curcas]
16 Hb_003077_130 0.1862000875 - - hypothetical protein JCGZ_22476 [Jatropha curcas]
17 Hb_010757_030 0.1865676666 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_004735_020 0.1883471642 - - PREDICTED: uncharacterized protein LOC105639315 [Jatropha curcas]
19 Hb_001266_120 0.1894150129 - - auxilin, putative [Ricinus communis]
20 Hb_002636_040 0.1903543477 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH49 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_012165_020 Hb_012165_020 Hb_005288_110 Hb_005288_110 Hb_012165_020--Hb_005288_110 Hb_000599_230 Hb_000599_230 Hb_012165_020--Hb_000599_230 Hb_001675_050 Hb_001675_050 Hb_012165_020--Hb_001675_050 Hb_007313_100 Hb_007313_100 Hb_012165_020--Hb_007313_100 Hb_002681_080 Hb_002681_080 Hb_012165_020--Hb_002681_080 Hb_002276_070 Hb_002276_070 Hb_012165_020--Hb_002276_070 Hb_003777_250 Hb_003777_250 Hb_005288_110--Hb_003777_250 Hb_001266_120 Hb_001266_120 Hb_005288_110--Hb_001266_120 Hb_003632_030 Hb_003632_030 Hb_005288_110--Hb_003632_030 Hb_004738_110 Hb_004738_110 Hb_005288_110--Hb_004738_110 Hb_002320_090 Hb_002320_090 Hb_005288_110--Hb_002320_090 Hb_004735_020 Hb_004735_020 Hb_000599_230--Hb_004735_020 Hb_000599_230--Hb_002681_080 Hb_002740_190 Hb_002740_190 Hb_000599_230--Hb_002740_190 Hb_010757_030 Hb_010757_030 Hb_000599_230--Hb_010757_030 Hb_000479_170 Hb_000479_170 Hb_000599_230--Hb_000479_170 Hb_025477_050 Hb_025477_050 Hb_000599_230--Hb_025477_050 Hb_001976_060 Hb_001976_060 Hb_001675_050--Hb_001976_060 Hb_000505_080 Hb_000505_080 Hb_001675_050--Hb_000505_080 Hb_001675_050--Hb_003777_250 Hb_000815_230 Hb_000815_230 Hb_001675_050--Hb_000815_230 Hb_001623_080 Hb_001623_080 Hb_001675_050--Hb_001623_080 Hb_137276_010 Hb_137276_010 Hb_007313_100--Hb_137276_010 Hb_011931_060 Hb_011931_060 Hb_007313_100--Hb_011931_060 Hb_003058_020 Hb_003058_020 Hb_007313_100--Hb_003058_020 Hb_007313_110 Hb_007313_110 Hb_007313_100--Hb_007313_110 Hb_143629_060 Hb_143629_060 Hb_007313_100--Hb_143629_060 Hb_004987_070 Hb_004987_070 Hb_007313_100--Hb_004987_070 Hb_000521_090 Hb_000521_090 Hb_002681_080--Hb_000521_090 Hb_002681_080--Hb_010757_030 Hb_007002_010 Hb_007002_010 Hb_002681_080--Hb_007002_010 Hb_003077_130 Hb_003077_130 Hb_002681_080--Hb_003077_130 Hb_000352_220 Hb_000352_220 Hb_002681_080--Hb_000352_220 Hb_001437_120 Hb_001437_120 Hb_002276_070--Hb_001437_120 Hb_002495_060 Hb_002495_060 Hb_002276_070--Hb_002495_060 Hb_002368_070 Hb_002368_070 Hb_002276_070--Hb_002368_070 Hb_028707_110 Hb_028707_110 Hb_002276_070--Hb_028707_110 Hb_004785_070 Hb_004785_070 Hb_002276_070--Hb_004785_070 Hb_010488_010 Hb_010488_010 Hb_002276_070--Hb_010488_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
69.9646 24.4693 51.9987 83.2065 70.1245 43.1317
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.3604 4.06947 7.30866 36.8503 253.56

CAGE analysis