Hb_003058_020

Information

Type -
Description -
Location Contig3058: 3866-9972
Sequence    

Annotation

kegg
ID rcu:RCOM_1478990
description multidrug resistance pump, putative
nr
ID XP_012066445.1
description PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Jatropha curcas]
swissprot
ID Q66GI4
description Proteinaceous RNase P 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=PRORP1 PE=1 SV=1
trembl
ID B9SJ92
description Multidrug resistance pump, putative OS=Ricinus communis GN=RCOM_1478990 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32294: 3951-9846 , PASA_asmbl_32295: 3976-9846 , PASA_asmbl_32296: 3976-9846
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003058_020 0.0 - - PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Jatropha curcas]
2 Hb_004987_070 0.0755144438 - - PREDICTED: heat shock 70 kDa protein 17-like isoform X1 [Jatropha curcas]
3 Hb_000015_100 0.1210818657 - - PREDICTED: probable methionine--tRNA ligase, mitochondrial [Jatropha curcas]
4 Hb_048141_020 0.1263234924 - - tetratricopeptide repeat-like superfamily protein, partial [Manihot esculenta]
5 Hb_011931_060 0.1282247898 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like [Jatropha curcas]
6 Hb_006618_050 0.1285776825 - - PREDICTED: elongation factor G-2, chloroplastic [Jatropha curcas]
7 Hb_007035_040 0.1302252796 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Jatropha curcas]
8 Hb_007313_100 0.1302664045 desease resistance Gene Name: NB-ARC Disease resistance protein RPS2, putative [Ricinus communis]
9 Hb_000084_280 0.1324461364 - - PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Jatropha curcas]
10 Hb_002368_070 0.1333140056 - - PREDICTED: uncharacterized protein LOC105634087 [Jatropha curcas]
11 Hb_004884_020 0.1359803138 - - PREDICTED: BAG family molecular chaperone regulator 4 isoform X2 [Jatropha curcas]
12 Hb_003900_030 0.1359853146 - - PREDICTED: pentatricopeptide repeat-containing protein At2g41720 isoform X1 [Jatropha curcas]
13 Hb_005470_020 0.1360103432 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Jatropha curcas]
14 Hb_048141_030 0.139501259 - - PREDICTED: pentatricopeptide repeat-containing protein At3g59040-like [Prunus mume]
15 Hb_000033_110 0.1408974084 - - hypothetical protein JCGZ_19253 [Jatropha curcas]
16 Hb_005250_030 0.145016635 - - PREDICTED: uncharacterized protein LOC105640177 [Jatropha curcas]
17 Hb_003388_030 0.1456396173 - - PREDICTED: uncharacterized protein LOC105649746 isoform X1 [Jatropha curcas]
18 Hb_009252_040 0.1467775003 - - PREDICTED: protein EXECUTER 2, chloroplastic [Jatropha curcas]
19 Hb_002233_130 0.1494388714 - - transporter, putative [Ricinus communis]
20 Hb_002053_110 0.1496176319 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003058_020 Hb_003058_020 Hb_004987_070 Hb_004987_070 Hb_003058_020--Hb_004987_070 Hb_000015_100 Hb_000015_100 Hb_003058_020--Hb_000015_100 Hb_048141_020 Hb_048141_020 Hb_003058_020--Hb_048141_020 Hb_011931_060 Hb_011931_060 Hb_003058_020--Hb_011931_060 Hb_006618_050 Hb_006618_050 Hb_003058_020--Hb_006618_050 Hb_007035_040 Hb_007035_040 Hb_003058_020--Hb_007035_040 Hb_004987_070--Hb_000015_100 Hb_003388_030 Hb_003388_030 Hb_004987_070--Hb_003388_030 Hb_000384_080 Hb_000384_080 Hb_004987_070--Hb_000384_080 Hb_005470_020 Hb_005470_020 Hb_004987_070--Hb_005470_020 Hb_000780_190 Hb_000780_190 Hb_004987_070--Hb_000780_190 Hb_000948_170 Hb_000948_170 Hb_000015_100--Hb_000948_170 Hb_000627_250 Hb_000627_250 Hb_000015_100--Hb_000627_250 Hb_000033_110 Hb_000033_110 Hb_000015_100--Hb_000033_110 Hb_031284_070 Hb_031284_070 Hb_000015_100--Hb_031284_070 Hb_000816_100 Hb_000816_100 Hb_000015_100--Hb_000816_100 Hb_008206_060 Hb_008206_060 Hb_000015_100--Hb_008206_060 Hb_048141_020--Hb_000816_100 Hb_023278_010 Hb_023278_010 Hb_048141_020--Hb_023278_010 Hb_048141_020--Hb_005470_020 Hb_048141_020--Hb_000015_100 Hb_001489_050 Hb_001489_050 Hb_048141_020--Hb_001489_050 Hb_048141_020--Hb_011931_060 Hb_000479_170 Hb_000479_170 Hb_011931_060--Hb_000479_170 Hb_011931_060--Hb_000816_100 Hb_002368_070 Hb_002368_070 Hb_011931_060--Hb_002368_070 Hb_000958_070 Hb_000958_070 Hb_011931_060--Hb_000958_070 Hb_000331_560 Hb_000331_560 Hb_011931_060--Hb_000331_560 Hb_011931_060--Hb_000033_110 Hb_003506_050 Hb_003506_050 Hb_006618_050--Hb_003506_050 Hb_005250_030 Hb_005250_030 Hb_006618_050--Hb_005250_030 Hb_007545_130 Hb_007545_130 Hb_006618_050--Hb_007545_130 Hb_000815_170 Hb_000815_170 Hb_006618_050--Hb_000815_170 Hb_156279_010 Hb_156279_010 Hb_006618_050--Hb_156279_010 Hb_006618_050--Hb_002368_070 Hb_000245_150 Hb_000245_150 Hb_007035_040--Hb_000245_150 Hb_000320_470 Hb_000320_470 Hb_007035_040--Hb_000320_470 Hb_002233_130 Hb_002233_130 Hb_007035_040--Hb_002233_130 Hb_000331_130 Hb_000331_130 Hb_007035_040--Hb_000331_130 Hb_004884_180 Hb_004884_180 Hb_007035_040--Hb_004884_180 Hb_001008_050 Hb_001008_050 Hb_007035_040--Hb_001008_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.4396 5.12319 10.8108 5.43137 12.9092 14.8524
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.34415 2.18873 3.64838 9.2922 24.3789

CAGE analysis