Hb_000384_080

Information

Type -
Description -
Location Contig384: 124155-132013
Sequence    

Annotation

kegg
ID rcu:RCOM_1329400
description protein with unknown function
nr
ID XP_012079720.1
description PREDICTED: RING-H2 finger protein ATL7-like isoform X2 [Jatropha curcas]
swissprot
ID Q9SN28
description RING-H2 finger protein ATL7 OS=Arabidopsis thaliana GN=ATL7 PE=2 SV=1
trembl
ID A0A067K658
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14847 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring-h2 finger protein atl7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38690: 124856-125310
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000384_080 0.0 - - PREDICTED: RING-H2 finger protein ATL7-like isoform X2 [Jatropha curcas]
2 Hb_004701_050 0.0974090975 - - alpha1 family protein [Populus trichocarpa]
3 Hb_001369_350 0.1043985462 - - Cisplatin resistance-associated overexpressed protein, putative [Ricinus communis]
4 Hb_003388_030 0.1085084948 - - PREDICTED: uncharacterized protein LOC105649746 isoform X1 [Jatropha curcas]
5 Hb_001369_040 0.1093938128 - - PREDICTED: probable isoaspartyl peptidase/L-asparaginase 3 isoform X1 [Jatropha curcas]
6 Hb_001504_040 0.1095264146 - - PREDICTED: factor of DNA methylation 1-like [Jatropha curcas]
7 Hb_002631_140 0.1098780263 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 12, chloroplastic [Jatropha curcas]
8 Hb_000261_100 0.1101631832 - - PREDICTED: beta-galactosidase 9 isoform X2 [Jatropha curcas]
9 Hb_006573_170 0.1110948637 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007456_040 0.1116753319 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B [Jatropha curcas]
11 Hb_003739_030 0.112001054 - - PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [Jatropha curcas]
12 Hb_005053_010 0.1133206729 - - PREDICTED: protease Do-like 9 [Jatropha curcas]
13 Hb_000780_190 0.114322944 transcription factor TF Family: Orphans PREDICTED: histidine kinase 2 [Jatropha curcas]
14 Hb_006508_030 0.1166208796 - - PREDICTED: CDPK-related kinase 1-like [Jatropha curcas]
15 Hb_160459_040 0.1168841221 - - hypothetical protein JCGZ_01511 [Jatropha curcas]
16 Hb_003104_040 0.1169985947 - - PREDICTED: insulin-degrading enzyme isoform X1 [Jatropha curcas]
17 Hb_000935_090 0.1190629756 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
18 Hb_004987_070 0.1192178902 - - PREDICTED: heat shock 70 kDa protein 17-like isoform X1 [Jatropha curcas]
19 Hb_001452_220 0.121449267 - - PREDICTED: molybdopterin biosynthesis protein CNX1 [Jatropha curcas]
20 Hb_006445_010 0.1247264667 - - PREDICTED: uncharacterized protein LOC105640147 [Jatropha curcas]

Gene co-expression network

sample Hb_000384_080 Hb_000384_080 Hb_004701_050 Hb_004701_050 Hb_000384_080--Hb_004701_050 Hb_001369_350 Hb_001369_350 Hb_000384_080--Hb_001369_350 Hb_003388_030 Hb_003388_030 Hb_000384_080--Hb_003388_030 Hb_001369_040 Hb_001369_040 Hb_000384_080--Hb_001369_040 Hb_001504_040 Hb_001504_040 Hb_000384_080--Hb_001504_040 Hb_002631_140 Hb_002631_140 Hb_000384_080--Hb_002631_140 Hb_089140_050 Hb_089140_050 Hb_004701_050--Hb_089140_050 Hb_162275_040 Hb_162275_040 Hb_004701_050--Hb_162275_040 Hb_000261_100 Hb_000261_100 Hb_004701_050--Hb_000261_100 Hb_000780_190 Hb_000780_190 Hb_004701_050--Hb_000780_190 Hb_010272_010 Hb_010272_010 Hb_004701_050--Hb_010272_010 Hb_000035_410 Hb_000035_410 Hb_004701_050--Hb_000035_410 Hb_001178_150 Hb_001178_150 Hb_001369_350--Hb_001178_150 Hb_000935_090 Hb_000935_090 Hb_001369_350--Hb_000935_090 Hb_010925_020 Hb_010925_020 Hb_001369_350--Hb_010925_020 Hb_002307_350 Hb_002307_350 Hb_001369_350--Hb_002307_350 Hb_000120_620 Hb_000120_620 Hb_001369_350--Hb_000120_620 Hb_000025_650 Hb_000025_650 Hb_001369_350--Hb_000025_650 Hb_001009_100 Hb_001009_100 Hb_003388_030--Hb_001009_100 Hb_067776_020 Hb_067776_020 Hb_003388_030--Hb_067776_020 Hb_004987_070 Hb_004987_070 Hb_003388_030--Hb_004987_070 Hb_000300_120 Hb_000300_120 Hb_003388_030--Hb_000300_120 Hb_005470_020 Hb_005470_020 Hb_003388_030--Hb_005470_020 Hb_001369_040--Hb_001504_040 Hb_001935_110 Hb_001935_110 Hb_001369_040--Hb_001935_110 Hb_005053_010 Hb_005053_010 Hb_001369_040--Hb_005053_010 Hb_001427_190 Hb_001427_190 Hb_001369_040--Hb_001427_190 Hb_002078_100 Hb_002078_100 Hb_001369_040--Hb_002078_100 Hb_009296_010 Hb_009296_010 Hb_001369_040--Hb_009296_010 Hb_001504_040--Hb_005053_010 Hb_001504_040--Hb_009296_010 Hb_001504_040--Hb_000035_410 Hb_012490_060 Hb_012490_060 Hb_001504_040--Hb_012490_060 Hb_160459_040 Hb_160459_040 Hb_001504_040--Hb_160459_040 Hb_000082_070 Hb_000082_070 Hb_002631_140--Hb_000082_070 Hb_009771_110 Hb_009771_110 Hb_002631_140--Hb_009771_110 Hb_002631_140--Hb_160459_040 Hb_143489_010 Hb_143489_010 Hb_002631_140--Hb_143489_010 Hb_000261_030 Hb_000261_030 Hb_002631_140--Hb_000261_030 Hb_001789_040 Hb_001789_040 Hb_002631_140--Hb_001789_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.86557 5.45591 4.67584 4.64708 8.98184 9.439
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.2231 1.39987 0.841502 5.80376 8.37613

CAGE analysis