Hb_003388_030

Information

Type -
Description -
Location Contig3388: 19170-24793
Sequence    

Annotation

kegg
ID rcu:RCOM_0634770
description hypothetical protein
nr
ID XP_012091880.1
description PREDICTED: uncharacterized protein LOC105649746 isoform X1 [Jatropha curcas]
swissprot
ID A5GI62
description Ribosome maturation factor RimM OS=Synechococcus sp. (strain WH7803) GN=rimM PE=3 SV=1
trembl
ID A0A067JBL5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21667 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 16s rrna processing protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35410: 19745-23005 , PASA_asmbl_35411: 19745-68798 , PASA_asmbl_35417: 23070-23767
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003388_030 0.0 - - PREDICTED: uncharacterized protein LOC105649746 isoform X1 [Jatropha curcas]
2 Hb_001009_100 0.0997108888 - - -
3 Hb_067776_020 0.1070201534 - - PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Jatropha curcas]
4 Hb_000384_080 0.1085084948 - - PREDICTED: RING-H2 finger protein ATL7-like isoform X2 [Jatropha curcas]
5 Hb_004987_070 0.1130735025 - - PREDICTED: heat shock 70 kDa protein 17-like isoform X1 [Jatropha curcas]
6 Hb_000300_120 0.1163119849 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
7 Hb_005470_020 0.1226133127 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Jatropha curcas]
8 Hb_000084_280 0.1237872879 - - PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Jatropha curcas]
9 Hb_011931_060 0.1243841043 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like [Jatropha curcas]
10 Hb_048141_020 0.1338531857 - - tetratricopeptide repeat-like superfamily protein, partial [Manihot esculenta]
11 Hb_004884_020 0.1352523669 - - PREDICTED: BAG family molecular chaperone regulator 4 isoform X2 [Jatropha curcas]
12 Hb_002631_140 0.1354899625 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 12, chloroplastic [Jatropha curcas]
13 Hb_143489_010 0.1356715847 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 50 isoform X2 [Jatropha curcas]
14 Hb_009252_040 0.1413268909 - - PREDICTED: protein EXECUTER 2, chloroplastic [Jatropha curcas]
15 Hb_023278_010 0.143287596 - - Chaperone protein DnaJ [Glycine soja]
16 Hb_002368_070 0.1438635401 - - PREDICTED: uncharacterized protein LOC105634087 [Jatropha curcas]
17 Hb_018118_010 0.1443090624 - - DNA polymerase I, putative [Ricinus communis]
18 Hb_000347_560 0.1448287155 - - -
19 Hb_003058_020 0.1456396173 - - PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Jatropha curcas]
20 Hb_006573_170 0.1468976299 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003388_030 Hb_003388_030 Hb_001009_100 Hb_001009_100 Hb_003388_030--Hb_001009_100 Hb_067776_020 Hb_067776_020 Hb_003388_030--Hb_067776_020 Hb_000384_080 Hb_000384_080 Hb_003388_030--Hb_000384_080 Hb_004987_070 Hb_004987_070 Hb_003388_030--Hb_004987_070 Hb_000300_120 Hb_000300_120 Hb_003388_030--Hb_000300_120 Hb_005470_020 Hb_005470_020 Hb_003388_030--Hb_005470_020 Hb_004884_020 Hb_004884_020 Hb_001009_100--Hb_004884_020 Hb_001009_100--Hb_004987_070 Hb_001009_100--Hb_000300_120 Hb_000069_320 Hb_000069_320 Hb_001009_100--Hb_000069_320 Hb_001009_100--Hb_067776_020 Hb_000084_280 Hb_000084_280 Hb_067776_020--Hb_000084_280 Hb_067776_020--Hb_005470_020 Hb_000170_190 Hb_000170_190 Hb_067776_020--Hb_000170_190 Hb_067776_020--Hb_004987_070 Hb_004701_050 Hb_004701_050 Hb_000384_080--Hb_004701_050 Hb_001369_350 Hb_001369_350 Hb_000384_080--Hb_001369_350 Hb_001369_040 Hb_001369_040 Hb_000384_080--Hb_001369_040 Hb_001504_040 Hb_001504_040 Hb_000384_080--Hb_001504_040 Hb_002631_140 Hb_002631_140 Hb_000384_080--Hb_002631_140 Hb_003058_020 Hb_003058_020 Hb_004987_070--Hb_003058_020 Hb_000015_100 Hb_000015_100 Hb_004987_070--Hb_000015_100 Hb_004987_070--Hb_000384_080 Hb_004987_070--Hb_005470_020 Hb_000780_190 Hb_000780_190 Hb_004987_070--Hb_000780_190 Hb_000331_560 Hb_000331_560 Hb_000300_120--Hb_000331_560 Hb_018118_010 Hb_018118_010 Hb_000300_120--Hb_018118_010 Hb_000041_090 Hb_000041_090 Hb_000300_120--Hb_000041_090 Hb_006295_020 Hb_006295_020 Hb_000300_120--Hb_006295_020 Hb_003203_030 Hb_003203_030 Hb_000300_120--Hb_003203_030 Hb_000816_100 Hb_000816_100 Hb_000300_120--Hb_000816_100 Hb_048141_020 Hb_048141_020 Hb_005470_020--Hb_048141_020 Hb_005470_020--Hb_000084_280 Hb_005470_020--Hb_000816_100 Hb_005470_020--Hb_000015_100 Hb_000948_170 Hb_000948_170 Hb_005470_020--Hb_000948_170 Hb_005470_020--Hb_000300_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.5934 2.92773 2.1468 1.43702 4.28185 6.22203
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.00943 0.652169 0.747475 2.61288 6.53762

CAGE analysis