Hb_001369_350

Information

Type -
Description -
Location Contig1369: 321867-324995
Sequence    

Annotation

kegg
ID rcu:RCOM_1500440
description Cisplatin resistance-associated overexpressed protein, putative
nr
ID XP_002510955.1
description Cisplatin resistance-associated overexpressed protein, putative [Ricinus communis]
swissprot
ID Q5R8W6
description Luc7-like protein 3 OS=Pongo abelii GN=LUC7L3 PE=2 SV=1
trembl
ID B9R9T0
description Cisplatin resistance-associated overexpressed protein, putative OS=Ricinus communis GN=RCOM_1500440 PE=4 SV=1
Gene Ontology
ID GO:0005685
description luc7-like protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_350 0.0 - - Cisplatin resistance-associated overexpressed protein, putative [Ricinus communis]
2 Hb_001178_150 0.0785124988 - - PREDICTED: uncharacterized protein LOC105635484 [Jatropha curcas]
3 Hb_000935_090 0.0841898674 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
4 Hb_010925_020 0.0861822942 - - PREDICTED: fanconi-associated nuclease 1 homolog [Jatropha curcas]
5 Hb_002307_350 0.0902780986 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
6 Hb_000120_620 0.0912134402 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1a isoform X1 [Jatropha curcas]
7 Hb_000025_650 0.0921164106 - - exosome complex exonuclease rrp45, putative [Ricinus communis]
8 Hb_018202_050 0.0993934236 - - PREDICTED: tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A [Jatropha curcas]
9 Hb_003029_130 0.0997691214 - - carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis]
10 Hb_002374_320 0.1002307871 - - hypothetical protein JCGZ_12107 [Jatropha curcas]
11 Hb_001085_320 0.1043725803 transcription factor TF Family: LUG WD-repeat protein, putative [Ricinus communis]
12 Hb_000384_080 0.1043985462 - - PREDICTED: RING-H2 finger protein ATL7-like isoform X2 [Jatropha curcas]
13 Hb_000703_210 0.104821132 - - Inactive protein kinase [Gossypium arboreum]
14 Hb_000347_570 0.1063398217 - - PREDICTED: transcription initiation factor TFIID subunit 12b isoform X1 [Jatropha curcas]
15 Hb_004429_160 0.1066253018 - - PREDICTED: serine/threonine-protein kinase TAO3 isoform X1 [Jatropha curcas]
16 Hb_011930_080 0.1075843854 - - PREDICTED: uncharacterized protein LOC105649790 [Jatropha curcas]
17 Hb_003894_040 0.108213539 - - nucleotide binding protein, putative [Ricinus communis]
18 Hb_000879_160 0.1088469082 - - PREDICTED: F-box protein At3g12350 isoform X1 [Jatropha curcas]
19 Hb_001473_090 0.1090180628 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]
20 Hb_005053_010 0.109268421 - - PREDICTED: protease Do-like 9 [Jatropha curcas]

Gene co-expression network

sample Hb_001369_350 Hb_001369_350 Hb_001178_150 Hb_001178_150 Hb_001369_350--Hb_001178_150 Hb_000935_090 Hb_000935_090 Hb_001369_350--Hb_000935_090 Hb_010925_020 Hb_010925_020 Hb_001369_350--Hb_010925_020 Hb_002307_350 Hb_002307_350 Hb_001369_350--Hb_002307_350 Hb_000120_620 Hb_000120_620 Hb_001369_350--Hb_000120_620 Hb_000025_650 Hb_000025_650 Hb_001369_350--Hb_000025_650 Hb_001178_150--Hb_000935_090 Hb_000347_570 Hb_000347_570 Hb_001178_150--Hb_000347_570 Hb_000796_190 Hb_000796_190 Hb_001178_150--Hb_000796_190 Hb_001473_090 Hb_001473_090 Hb_001178_150--Hb_001473_090 Hb_009151_020 Hb_009151_020 Hb_001178_150--Hb_009151_020 Hb_001178_150--Hb_000120_620 Hb_001493_040 Hb_001493_040 Hb_000935_090--Hb_001493_040 Hb_001417_050 Hb_001417_050 Hb_000935_090--Hb_001417_050 Hb_000935_090--Hb_000796_190 Hb_000935_090--Hb_000025_650 Hb_004429_160 Hb_004429_160 Hb_000935_090--Hb_004429_160 Hb_003029_130 Hb_003029_130 Hb_010925_020--Hb_003029_130 Hb_010925_020--Hb_001473_090 Hb_010925_020--Hb_000935_090 Hb_010925_020--Hb_001178_150 Hb_029904_020 Hb_029904_020 Hb_010925_020--Hb_029904_020 Hb_005408_020 Hb_005408_020 Hb_002307_350--Hb_005408_020 Hb_002249_120 Hb_002249_120 Hb_002307_350--Hb_002249_120 Hb_008725_130 Hb_008725_130 Hb_002307_350--Hb_008725_130 Hb_017895_020 Hb_017895_020 Hb_002307_350--Hb_017895_020 Hb_000914_080 Hb_000914_080 Hb_002307_350--Hb_000914_080 Hb_000021_020 Hb_000021_020 Hb_002307_350--Hb_000021_020 Hb_004899_070 Hb_004899_070 Hb_000120_620--Hb_004899_070 Hb_004970_160 Hb_004970_160 Hb_000120_620--Hb_004970_160 Hb_000098_130 Hb_000098_130 Hb_000120_620--Hb_000098_130 Hb_003097_180 Hb_003097_180 Hb_000120_620--Hb_003097_180 Hb_000261_290 Hb_000261_290 Hb_000120_620--Hb_000261_290 Hb_000025_650--Hb_000347_570 Hb_000025_650--Hb_001178_150 Hb_000025_650--Hb_017895_020 Hb_000031_290 Hb_000031_290 Hb_000025_650--Hb_000031_290 Hb_000025_650--Hb_004429_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.6189 16.0286 12.2036 11.7395 22.4046 26.1323
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.54084 3.22996 2.22203 11.906 10.2884

CAGE analysis