Hb_001266_120

Information

Type -
Description -
Location Contig1266: 117339-124454
Sequence    

Annotation

kegg
ID rcu:RCOM_0535530
description auxilin, putative
nr
ID XP_002521556.1
description auxilin, putative [Ricinus communis]
swissprot
ID Q9FWS1
description Auxilin-like protein 1 OS=Arabidopsis thaliana GN=AUL1 PE=2 SV=2
trembl
ID B9S6D7
description Auxilin, putative OS=Ricinus communis GN=RCOM_0535530 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08035: 117381-119796 , PASA_asmbl_08036: 119806-121224 , PASA_asmbl_08037: 121279-121643 , PASA_asmbl_08039: 122662-124375 , PASA_asmbl_08041: 123847-124424
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001266_120 0.0 - - auxilin, putative [Ricinus communis]
2 Hb_002320_090 0.1135545215 - - PREDICTED: endoglucanase 25-like [Jatropha curcas]
3 Hb_005288_110 0.1358580831 - - PREDICTED: uncharacterized protein LOC105647752 [Jatropha curcas]
4 Hb_024570_040 0.153122606 - - PREDICTED: clathrin interactor EPSIN 1 [Jatropha curcas]
5 Hb_003632_030 0.1552973883 - - PREDICTED: heat shock cognate protein 80 [Jatropha curcas]
6 Hb_085187_010 0.156195949 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
7 Hb_177343_010 0.156327162 - - PREDICTED: uncharacterized protein LOC105650963 [Jatropha curcas]
8 Hb_001516_050 0.1578015173 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 [Jatropha curcas]
9 Hb_001789_020 0.1584930071 - - PREDICTED: tripeptidyl-peptidase 2 isoform X1 [Jatropha curcas]
10 Hb_000696_190 0.158839393 - - PREDICTED: protein MID1-COMPLEMENTING ACTIVITY 1 [Jatropha curcas]
11 Hb_003124_030 0.1630810057 - - At4g33625-like protein [Brassica napus]
12 Hb_000224_220 0.1640166712 - - PREDICTED: protein disulfide isomerase-like 2-3 [Jatropha curcas]
13 Hb_000270_710 0.1649282628 - - PREDICTED: WAT1-related protein At5g40240-like isoform X1 [Jatropha curcas]
14 Hb_000562_050 0.1692899329 - - PREDICTED: uncharacterized protein LOC105635369 [Jatropha curcas]
15 Hb_004746_010 0.1705976518 - - aldo/keto reductase, putative [Ricinus communis]
16 Hb_007943_150 0.1706496595 - - PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Jatropha curcas]
17 Hb_000265_070 0.1717531664 - - glucose-1-phosphate denylyltransferase small subunit [Hevea brasiliensis]
18 Hb_000964_170 0.1733365618 - - Cellulose synthase A catalytic subunit 6 [UDP-forming], putative [Ricinus communis]
19 Hb_014497_060 0.174541098 - - phosphofructokinase, putative [Ricinus communis]
20 Hb_003777_250 0.1746587834 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming]-like [Jatropha curcas]

Gene co-expression network

sample Hb_001266_120 Hb_001266_120 Hb_002320_090 Hb_002320_090 Hb_001266_120--Hb_002320_090 Hb_005288_110 Hb_005288_110 Hb_001266_120--Hb_005288_110 Hb_024570_040 Hb_024570_040 Hb_001266_120--Hb_024570_040 Hb_003632_030 Hb_003632_030 Hb_001266_120--Hb_003632_030 Hb_085187_010 Hb_085187_010 Hb_001266_120--Hb_085187_010 Hb_177343_010 Hb_177343_010 Hb_001266_120--Hb_177343_010 Hb_000964_170 Hb_000964_170 Hb_002320_090--Hb_000964_170 Hb_006916_030 Hb_006916_030 Hb_002320_090--Hb_006916_030 Hb_000270_710 Hb_000270_710 Hb_002320_090--Hb_000270_710 Hb_002320_090--Hb_003632_030 Hb_001411_050 Hb_001411_050 Hb_002320_090--Hb_001411_050 Hb_003777_250 Hb_003777_250 Hb_005288_110--Hb_003777_250 Hb_012165_020 Hb_012165_020 Hb_005288_110--Hb_012165_020 Hb_005288_110--Hb_003632_030 Hb_004738_110 Hb_004738_110 Hb_005288_110--Hb_004738_110 Hb_005288_110--Hb_002320_090 Hb_002232_490 Hb_002232_490 Hb_024570_040--Hb_002232_490 Hb_002284_100 Hb_002284_100 Hb_024570_040--Hb_002284_100 Hb_000849_080 Hb_000849_080 Hb_024570_040--Hb_000849_080 Hb_002392_020 Hb_002392_020 Hb_024570_040--Hb_002392_020 Hb_000358_210 Hb_000358_210 Hb_024570_040--Hb_000358_210 Hb_009524_030 Hb_009524_030 Hb_024570_040--Hb_009524_030 Hb_022250_100 Hb_022250_100 Hb_003632_030--Hb_022250_100 Hb_006846_080 Hb_006846_080 Hb_003632_030--Hb_006846_080 Hb_119600_050 Hb_119600_050 Hb_003632_030--Hb_119600_050 Hb_005250_010 Hb_005250_010 Hb_003632_030--Hb_005250_010 Hb_001411_030 Hb_001411_030 Hb_003632_030--Hb_001411_030 Hb_000562_050 Hb_000562_050 Hb_003632_030--Hb_000562_050 Hb_001210_040 Hb_001210_040 Hb_085187_010--Hb_001210_040 Hb_000244_260 Hb_000244_260 Hb_085187_010--Hb_000244_260 Hb_014497_060 Hb_014497_060 Hb_085187_010--Hb_014497_060 Hb_002026_070 Hb_002026_070 Hb_085187_010--Hb_002026_070 Hb_003490_050 Hb_003490_050 Hb_085187_010--Hb_003490_050 Hb_004984_080 Hb_004984_080 Hb_085187_010--Hb_004984_080 Hb_000270_660 Hb_000270_660 Hb_177343_010--Hb_000270_660 Hb_163145_030 Hb_163145_030 Hb_177343_010--Hb_163145_030 Hb_059741_010 Hb_059741_010 Hb_177343_010--Hb_059741_010 Hb_002164_020 Hb_002164_020 Hb_177343_010--Hb_002164_020 Hb_011310_050 Hb_011310_050 Hb_177343_010--Hb_011310_050 Hb_010175_030 Hb_010175_030 Hb_177343_010--Hb_010175_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.80142 3.52644 11.4886 11.7688 9.11384 4.74591
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.08495 0.351969 2.52319 14.3269 25.2045

CAGE analysis