Hb_001411_050

Information

Type -
Description -
Location Contig1411: 87157-88235
Sequence    

Annotation

kegg
ID rcu:RCOM_1316630
description hypothetical protein
nr
ID XP_012080770.1
description PREDICTED: uncharacterized protein LOC105640956 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K6V1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15541 PE=4 SV=1
Gene Ontology
ID GO:0009570
description PREDICTED: uncharacterized protein LOC105640956

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11129: 87880-88053 , PASA_asmbl_11130: 88080-88297
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001411_050 0.0 - - PREDICTED: uncharacterized protein LOC105640956 [Jatropha curcas]
2 Hb_001579_200 0.0923230254 - - nucleoredoxin, putative [Ricinus communis]
3 Hb_000359_220 0.107245811 - - PREDICTED: pentatricopeptide repeat-containing protein At2g42920, chloroplastic [Jatropha curcas]
4 Hb_006916_030 0.1080323054 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
5 Hb_006846_080 0.1137941126 - - calnexin, putative [Ricinus communis]
6 Hb_004225_040 0.115375386 - - PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Populus euphratica]
7 Hb_001140_180 0.122416953 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
8 Hb_000984_140 0.1226968411 - - PREDICTED: xylulose kinase [Jatropha curcas]
9 Hb_000964_170 0.1228893853 - - Cellulose synthase A catalytic subunit 6 [UDP-forming], putative [Ricinus communis]
10 Hb_000066_040 0.1232862842 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
11 Hb_001411_030 0.1239114323 - - hypothetical protein POPTR_0003s09620g [Populus trichocarpa]
12 Hb_001998_220 0.1263616665 - - PREDICTED: isoamylase 1, chloroplastic [Jatropha curcas]
13 Hb_002399_020 0.1270488035 - - PREDICTED: luminal-binding protein 5-like [Jatropha curcas]
14 Hb_002320_090 0.1294737001 - - PREDICTED: endoglucanase 25-like [Jatropha curcas]
15 Hb_001109_160 0.1321439627 - - DNA binding protein, putative [Ricinus communis]
16 Hb_005914_040 0.1336960699 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
17 Hb_029552_020 0.1342454469 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000281_070 0.1345846006 - - rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis]
19 Hb_000284_220 0.1360765738 - - alpha/beta hydrolase domain containing protein 1,3, putative [Ricinus communis]
20 Hb_006916_050 0.1365909756 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]

Gene co-expression network

sample Hb_001411_050 Hb_001411_050 Hb_001579_200 Hb_001579_200 Hb_001411_050--Hb_001579_200 Hb_000359_220 Hb_000359_220 Hb_001411_050--Hb_000359_220 Hb_006916_030 Hb_006916_030 Hb_001411_050--Hb_006916_030 Hb_006846_080 Hb_006846_080 Hb_001411_050--Hb_006846_080 Hb_004225_040 Hb_004225_040 Hb_001411_050--Hb_004225_040 Hb_001140_180 Hb_001140_180 Hb_001411_050--Hb_001140_180 Hb_006916_050 Hb_006916_050 Hb_001579_200--Hb_006916_050 Hb_005571_010 Hb_005571_010 Hb_001579_200--Hb_005571_010 Hb_005914_040 Hb_005914_040 Hb_001579_200--Hb_005914_040 Hb_001411_030 Hb_001411_030 Hb_001579_200--Hb_001411_030 Hb_001579_200--Hb_006846_080 Hb_000320_360 Hb_000320_360 Hb_000359_220--Hb_000320_360 Hb_013399_090 Hb_013399_090 Hb_000359_220--Hb_013399_090 Hb_000906_070 Hb_000906_070 Hb_000359_220--Hb_000906_070 Hb_000359_220--Hb_006846_080 Hb_000359_220--Hb_001411_030 Hb_001109_160 Hb_001109_160 Hb_006916_030--Hb_001109_160 Hb_000964_170 Hb_000964_170 Hb_006916_030--Hb_000964_170 Hb_006916_030--Hb_001140_180 Hb_000445_370 Hb_000445_370 Hb_006916_030--Hb_000445_370 Hb_008616_040 Hb_008616_040 Hb_006916_030--Hb_008616_040 Hb_029552_020 Hb_029552_020 Hb_006916_030--Hb_029552_020 Hb_006846_080--Hb_005914_040 Hb_000025_500 Hb_000025_500 Hb_006846_080--Hb_000025_500 Hb_002399_020 Hb_002399_020 Hb_006846_080--Hb_002399_020 Hb_010757_030 Hb_010757_030 Hb_006846_080--Hb_010757_030 Hb_003632_030 Hb_003632_030 Hb_006846_080--Hb_003632_030 Hb_006846_080--Hb_004225_040 Hb_000771_170 Hb_000771_170 Hb_004225_040--Hb_000771_170 Hb_001472_160 Hb_001472_160 Hb_004225_040--Hb_001472_160 Hb_004884_180 Hb_004884_180 Hb_004225_040--Hb_004884_180 Hb_000224_220 Hb_000224_220 Hb_004225_040--Hb_000224_220 Hb_004225_040--Hb_001140_180 Hb_002828_060 Hb_002828_060 Hb_004225_040--Hb_002828_060 Hb_001140_180--Hb_029552_020 Hb_001140_180--Hb_002828_060 Hb_001279_020 Hb_001279_020 Hb_001140_180--Hb_001279_020 Hb_000562_070 Hb_000562_070 Hb_001140_180--Hb_000562_070 Hb_001053_080 Hb_001053_080 Hb_001140_180--Hb_001053_080 Hb_001411_130 Hb_001411_130 Hb_001140_180--Hb_001411_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.29111 8.68286 10.4682 12.0057 7.85431 3.54412
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.85118 1.4267 1.57122 7.99385 22.2622

CAGE analysis