Hb_002399_020

Information

Type -
Description -
Location Contig2399: 57171-60691
Sequence    

Annotation

kegg
ID rcu:RCOM_1312280
description heat shock protein, putative (EC:1.3.1.74)
nr
ID XP_012086670.1
description PREDICTED: luminal-binding protein 5-like [Jatropha curcas]
swissprot
ID Q03685
description Luminal-binding protein 5 OS=Nicotiana tabacum GN=BIP5 PE=2 SV=1
trembl
ID A0A067JZ43
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20411 PE=3 SV=1
Gene Ontology
ID GO:0005783
description luminal-binding protein 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25110: 57378-60785
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002399_020 0.0 - - PREDICTED: luminal-binding protein 5-like [Jatropha curcas]
2 Hb_006846_080 0.0948525902 - - calnexin, putative [Ricinus communis]
3 Hb_000762_110 0.1139495314 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
4 Hb_021409_190 0.1159874776 - - PREDICTED: luminal-binding protein 5-like [Jatropha curcas]
5 Hb_016760_010 0.1182758526 - - ABC transporter family protein [Hevea brasiliensis]
6 Hb_010757_030 0.1186730776 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_000120_860 0.1188875135 - - nucellin, putative [Ricinus communis]
8 Hb_000025_500 0.1210887915 - - Ran GTPase binding protein, putative [Ricinus communis]
9 Hb_001579_200 0.1212197064 - - nucleoredoxin, putative [Ricinus communis]
10 Hb_001009_260 0.1223895702 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X1 [Jatropha curcas]
11 Hb_005914_040 0.1261758702 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
12 Hb_001411_050 0.1270488035 - - PREDICTED: uncharacterized protein LOC105640956 [Jatropha curcas]
13 Hb_002150_020 0.1281864161 - - PREDICTED: translation initiation factor IF-2, mitochondrial isoform X1 [Jatropha curcas]
14 Hb_052946_010 0.1285150767 - - PREDICTED: uncharacterized protein LOC105639103 [Jatropha curcas]
15 Hb_004041_030 0.1300636759 - - PREDICTED: mitochondrial substrate carrier family protein C-like isoform X1 [Populus euphratica]
16 Hb_005571_010 0.1310506165 - - PREDICTED: 15-cis-phytoene desaturase, chloroplastic/chromoplastic [Jatropha curcas]
17 Hb_004225_040 0.1314319808 - - PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Populus euphratica]
18 Hb_018043_020 0.1330065803 - - PREDICTED: pentatricopeptide repeat-containing protein MRL1, chloroplastic [Jatropha curcas]
19 Hb_001677_220 0.1336348638 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
20 Hb_009178_060 0.1341183267 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002399_020 Hb_002399_020 Hb_006846_080 Hb_006846_080 Hb_002399_020--Hb_006846_080 Hb_000762_110 Hb_000762_110 Hb_002399_020--Hb_000762_110 Hb_021409_190 Hb_021409_190 Hb_002399_020--Hb_021409_190 Hb_016760_010 Hb_016760_010 Hb_002399_020--Hb_016760_010 Hb_010757_030 Hb_010757_030 Hb_002399_020--Hb_010757_030 Hb_000120_860 Hb_000120_860 Hb_002399_020--Hb_000120_860 Hb_005914_040 Hb_005914_040 Hb_006846_080--Hb_005914_040 Hb_000025_500 Hb_000025_500 Hb_006846_080--Hb_000025_500 Hb_006846_080--Hb_010757_030 Hb_003632_030 Hb_003632_030 Hb_006846_080--Hb_003632_030 Hb_004225_040 Hb_004225_040 Hb_006846_080--Hb_004225_040 Hb_005914_210 Hb_005914_210 Hb_000762_110--Hb_005914_210 Hb_000376_210 Hb_000376_210 Hb_000762_110--Hb_000376_210 Hb_001250_020 Hb_001250_020 Hb_000762_110--Hb_001250_020 Hb_002928_030 Hb_002928_030 Hb_000762_110--Hb_002928_030 Hb_000762_110--Hb_000120_860 Hb_000579_040 Hb_000579_040 Hb_000762_110--Hb_000579_040 Hb_008616_040 Hb_008616_040 Hb_021409_190--Hb_008616_040 Hb_000640_260 Hb_000640_260 Hb_021409_190--Hb_000640_260 Hb_003029_140 Hb_003029_140 Hb_021409_190--Hb_003029_140 Hb_018043_020 Hb_018043_020 Hb_021409_190--Hb_018043_020 Hb_001109_160 Hb_001109_160 Hb_021409_190--Hb_001109_160 Hb_002811_190 Hb_002811_190 Hb_021409_190--Hb_002811_190 Hb_010984_010 Hb_010984_010 Hb_016760_010--Hb_010984_010 Hb_001009_260 Hb_001009_260 Hb_016760_010--Hb_001009_260 Hb_003142_010 Hb_003142_010 Hb_016760_010--Hb_003142_010 Hb_001080_070 Hb_001080_070 Hb_016760_010--Hb_001080_070 Hb_010344_030 Hb_010344_030 Hb_016760_010--Hb_010344_030 Hb_016760_010--Hb_010757_030 Hb_000069_490 Hb_000069_490 Hb_010757_030--Hb_000069_490 Hb_003878_080 Hb_003878_080 Hb_010757_030--Hb_003878_080 Hb_028707_110 Hb_028707_110 Hb_010757_030--Hb_028707_110 Hb_010757_030--Hb_003029_140 Hb_000270_660 Hb_000270_660 Hb_000120_860--Hb_000270_660 Hb_000120_860--Hb_001009_260 Hb_000000_310 Hb_000000_310 Hb_000120_860--Hb_000000_310 Hb_030959_010 Hb_030959_010 Hb_000120_860--Hb_030959_010 Hb_005116_140 Hb_005116_140 Hb_000120_860--Hb_005116_140 Hb_003682_070 Hb_003682_070 Hb_000120_860--Hb_003682_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.554 65.0084 67.4643 81.25 63.6042 23.4791
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.6773 25.3838 34.2403 48.7943 235.062

CAGE analysis