Hb_016760_010

Information

Type -
Description -
Location Contig16760: 7831-23363
Sequence    

Annotation

kegg
ID pop:POPTR_0010s18400g
description POPTRDRAFT_226685; hypothetical protein
nr
ID AIU41640.1
description ABC transporter family protein [Hevea brasiliensis]
swissprot
ID Q6NLC1
description ABC transporter D family member 2, chloroplastic OS=Arabidopsis thaliana GN=ABCC2 PE=1 SV=1
trembl
ID A0A097P9Q3
description ABC transporter family protein OS=Hevea brasiliensis GN=ABCD2 PE=2 SV=1
Gene Ontology
ID GO:0016021
description abc transporter d family member chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15544: 8681-9099 , PASA_asmbl_15545: 9227-10153 , PASA_asmbl_15546: 14588-22974
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_016760_010 0.0 - - ABC transporter family protein [Hevea brasiliensis]
2 Hb_010984_010 0.0952467651 - - PREDICTED: translation factor GUF1 homolog, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_001009_260 0.0971665726 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X1 [Jatropha curcas]
4 Hb_003142_010 0.1025246143 transcription factor TF Family: SET PREDICTED: LOW QUALITY PROTEIN: histone-lysine N-methyltransferase ATX5-like [Populus euphratica]
5 Hb_001080_070 0.1043590633 - - 1,4-alpha-glucan branching enzyme [Manihot esculenta]
6 Hb_010344_030 0.1063504952 - - conserved hypothetical protein [Ricinus communis]
7 Hb_010757_030 0.1069650664 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_006846_080 0.1090151662 - - calnexin, putative [Ricinus communis]
9 Hb_001677_220 0.109433957 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
10 Hb_002740_190 0.1100505588 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Jatropha curcas]
11 Hb_000069_490 0.1113645925 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001250_020 0.1136178758 - - PREDICTED: CRS2-associated factor 2, chloroplastic [Jatropha curcas]
13 Hb_130589_010 0.114022149 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
14 Hb_002399_020 0.1182758526 - - PREDICTED: luminal-binding protein 5-like [Jatropha curcas]
15 Hb_004735_020 0.1201797421 - - PREDICTED: uncharacterized protein LOC105639315 [Jatropha curcas]
16 Hb_000352_220 0.121882864 - - PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Jatropha curcas]
17 Hb_008616_040 0.1227019945 - - PREDICTED: RNA-binding protein CP33, chloroplastic [Jatropha curcas]
18 Hb_000189_450 0.1236137162 - - Zeta-carotene desaturase, chloroplast precursor, putative [Ricinus communis]
19 Hb_018043_020 0.1239442591 - - PREDICTED: pentatricopeptide repeat-containing protein MRL1, chloroplastic [Jatropha curcas]
20 Hb_003029_140 0.124446707 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_016760_010 Hb_016760_010 Hb_010984_010 Hb_010984_010 Hb_016760_010--Hb_010984_010 Hb_001009_260 Hb_001009_260 Hb_016760_010--Hb_001009_260 Hb_003142_010 Hb_003142_010 Hb_016760_010--Hb_003142_010 Hb_001080_070 Hb_001080_070 Hb_016760_010--Hb_001080_070 Hb_010344_030 Hb_010344_030 Hb_016760_010--Hb_010344_030 Hb_010757_030 Hb_010757_030 Hb_016760_010--Hb_010757_030 Hb_000803_220 Hb_000803_220 Hb_010984_010--Hb_000803_220 Hb_008616_040 Hb_008616_040 Hb_010984_010--Hb_008616_040 Hb_000803_240 Hb_000803_240 Hb_010984_010--Hb_000803_240 Hb_007576_180 Hb_007576_180 Hb_010984_010--Hb_007576_180 Hb_018043_020 Hb_018043_020 Hb_010984_010--Hb_018043_020 Hb_130589_010 Hb_130589_010 Hb_001009_260--Hb_130589_010 Hb_000120_860 Hb_000120_860 Hb_001009_260--Hb_000120_860 Hb_002150_020 Hb_002150_020 Hb_001009_260--Hb_002150_020 Hb_005571_010 Hb_005571_010 Hb_001009_260--Hb_005571_010 Hb_004735_020 Hb_004735_020 Hb_001009_260--Hb_004735_020 Hb_000579_040 Hb_000579_040 Hb_001009_260--Hb_000579_040 Hb_001677_220 Hb_001677_220 Hb_003142_010--Hb_001677_220 Hb_000189_450 Hb_000189_450 Hb_003142_010--Hb_000189_450 Hb_003142_010--Hb_001080_070 Hb_000200_010 Hb_000200_010 Hb_003142_010--Hb_000200_010 Hb_003142_010--Hb_001009_260 Hb_000617_250 Hb_000617_250 Hb_003142_010--Hb_000617_250 Hb_001080_070--Hb_000189_450 Hb_000345_370 Hb_000345_370 Hb_001080_070--Hb_000345_370 Hb_000648_040 Hb_000648_040 Hb_001080_070--Hb_000648_040 Hb_016461_030 Hb_016461_030 Hb_001080_070--Hb_016461_030 Hb_001080_070--Hb_001677_220 Hb_006006_060 Hb_006006_060 Hb_010344_030--Hb_006006_060 Hb_005250_010 Hb_005250_010 Hb_010344_030--Hb_005250_010 Hb_000200_350 Hb_000200_350 Hb_010344_030--Hb_000200_350 Hb_000388_150 Hb_000388_150 Hb_010344_030--Hb_000388_150 Hb_010344_030--Hb_004735_020 Hb_003462_060 Hb_003462_060 Hb_010344_030--Hb_003462_060 Hb_000069_490 Hb_000069_490 Hb_010757_030--Hb_000069_490 Hb_003878_080 Hb_003878_080 Hb_010757_030--Hb_003878_080 Hb_028707_110 Hb_028707_110 Hb_010757_030--Hb_028707_110 Hb_006846_080 Hb_006846_080 Hb_010757_030--Hb_006846_080 Hb_003029_140 Hb_003029_140 Hb_010757_030--Hb_003029_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.60856 3.94314 5.49915 6.33794 3.18706 4.71737
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.07233 2.34029 1.88789 4.21562 20.2269

CAGE analysis