Hb_007576_180

Information

Type -
Description -
Location Contig7576: 162602-171373
Sequence    

Annotation

kegg
ID rcu:RCOM_0264050
description protein phosphatase 2c, putative
nr
ID XP_012084617.1
description PREDICTED: probable protein phosphatase 2C 62 isoform X5 [Jatropha curcas]
swissprot
ID Q339D2
description Probable protein phosphatase 2C 71 OS=Oryza sativa subsp. japonica GN=Os10g0370000 PE=2 SV=1
trembl
ID A0A067JX55
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20202 PE=4 SV=1
Gene Ontology
ID GO:0009507
description probable protein phosphatase 2c 62 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57132: 162755-171478 , PASA_asmbl_57133: 167516-169882
cDNA
(Sanger)
(ID:Location)		 040_D18.ab1: 170795-171478

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007576_180 0.0 - - PREDICTED: probable protein phosphatase 2C 62 isoform X5 [Jatropha curcas]
2 Hb_000803_220 0.0676437033 - - PREDICTED: magnesium-chelatase subunit ChlD, chloroplastic [Jatropha curcas]
3 Hb_010984_010 0.0892716948 - - PREDICTED: translation factor GUF1 homolog, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_004629_030 0.1001273125 - - ABC transporter family protein [Hevea brasiliensis]
5 Hb_004837_020 0.1015618218 - - PREDICTED: uncharacterized protein LOC105648271 [Jatropha curcas]
6 Hb_001425_010 0.1021171489 - - sugar transporter, putative [Ricinus communis]
7 Hb_018043_020 0.10385253 - - PREDICTED: pentatricopeptide repeat-containing protein MRL1, chloroplastic [Jatropha curcas]
8 Hb_006816_010 0.1043905376 - - conserved hypothetical protein [Ricinus communis]
9 Hb_159809_090 0.1075200944 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Hevea brasiliensis]
10 Hb_004225_040 0.1095849761 - - PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Populus euphratica]
11 Hb_000482_050 0.1104013132 - - PREDICTED: UDP-sulfoquinovose synthase, chloroplastic [Jatropha curcas]
12 Hb_000358_040 0.114368628 - - PREDICTED: probable plastid-lipid-associated protein 4, chloroplastic [Jatropha curcas]
13 Hb_164926_010 0.1165545744 - - Granule-bound starch synthase 1, chloroplastic/amyloplastic [Gossypium arboreum]
14 Hb_002973_110 0.1189009588 - - ABC transporter family protein [Hevea brasiliensis]
15 Hb_004884_180 0.1199004756 - - PREDICTED: protein TIC 56, chloroplastic [Jatropha curcas]
16 Hb_001472_160 0.1211138401 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
17 Hb_002828_060 0.1216935692 - - PREDICTED: probable phytol kinase 3, chloroplastic [Jatropha curcas]
18 Hb_000771_170 0.1221461176 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial [Jatropha curcas]
19 Hb_000617_250 0.1223692621 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic [Jatropha curcas]
20 Hb_000906_070 0.1226064641 - - PREDICTED: protein SCAR2-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007576_180 Hb_007576_180 Hb_000803_220 Hb_000803_220 Hb_007576_180--Hb_000803_220 Hb_010984_010 Hb_010984_010 Hb_007576_180--Hb_010984_010 Hb_004629_030 Hb_004629_030 Hb_007576_180--Hb_004629_030 Hb_004837_020 Hb_004837_020 Hb_007576_180--Hb_004837_020 Hb_001425_010 Hb_001425_010 Hb_007576_180--Hb_001425_010 Hb_018043_020 Hb_018043_020 Hb_007576_180--Hb_018043_020 Hb_000803_220--Hb_010984_010 Hb_164926_010 Hb_164926_010 Hb_000803_220--Hb_164926_010 Hb_000803_240 Hb_000803_240 Hb_000803_220--Hb_000803_240 Hb_000803_220--Hb_001425_010 Hb_000803_220--Hb_018043_020 Hb_008616_040 Hb_008616_040 Hb_010984_010--Hb_008616_040 Hb_010984_010--Hb_000803_240 Hb_010984_010--Hb_018043_020 Hb_016760_010 Hb_016760_010 Hb_010984_010--Hb_016760_010 Hb_000482_050 Hb_000482_050 Hb_004629_030--Hb_000482_050 Hb_068804_090 Hb_068804_090 Hb_004629_030--Hb_068804_090 Hb_000748_090 Hb_000748_090 Hb_004629_030--Hb_000748_090 Hb_007012_030 Hb_007012_030 Hb_004629_030--Hb_007012_030 Hb_000358_040 Hb_000358_040 Hb_004629_030--Hb_000358_040 Hb_000617_250 Hb_000617_250 Hb_004629_030--Hb_000617_250 Hb_000453_230 Hb_000453_230 Hb_004837_020--Hb_000453_230 Hb_000665_070 Hb_000665_070 Hb_004837_020--Hb_000665_070 Hb_000771_170 Hb_000771_170 Hb_004837_020--Hb_000771_170 Hb_000665_150 Hb_000665_150 Hb_004837_020--Hb_000665_150 Hb_002447_050 Hb_002447_050 Hb_004837_020--Hb_002447_050 Hb_001425_010--Hb_018043_020 Hb_001425_010--Hb_008616_040 Hb_159809_090 Hb_159809_090 Hb_001425_010--Hb_159809_090 Hb_000510_190 Hb_000510_190 Hb_001425_010--Hb_000510_190 Hb_003549_050 Hb_003549_050 Hb_001425_010--Hb_003549_050 Hb_003029_140 Hb_003029_140 Hb_001425_010--Hb_003029_140 Hb_018043_020--Hb_003029_140 Hb_018043_020--Hb_159809_090 Hb_001250_020 Hb_001250_020 Hb_018043_020--Hb_001250_020 Hb_018043_020--Hb_008616_040 Hb_018043_020--Hb_004629_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.60538 3.76119 6.89088 3.04797 2.26988 2.55895
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.42052 0.911867 0.560141 4.39954 11.5844

CAGE analysis