Hb_000270_660

Information

Type -
Description -
Location Contig270: 527607-534093
Sequence    

Annotation

kegg
ID rcu:RCOM_1511950
description purine permease, putative
nr
ID XP_002511446.1
description purine permease, putative [Ricinus communis]
swissprot
ID Q27GI3
description Nucleobase-ascorbate transporter 6 OS=Arabidopsis thaliana GN=NAT6 PE=2 SV=2
trembl
ID B9RB71
description Purine permease, putative OS=Ricinus communis GN=RCOM_1511950 PE=4 SV=1
Gene Ontology
ID GO:0016020
description nucleobase-ascorbate transporter 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28249: 527664-534073 , PASA_asmbl_28250: 530321-531094 , PASA_asmbl_28251: 527669-533621 , PASA_asmbl_28252: 532972-533713 , PASA_asmbl_28253: 531098-531486 , PASA_asmbl_28254: 531827-532277 , PASA_asmbl_28256: 529765-530270
cDNA
(Sanger)
(ID:Location)		 008_I11.ab1: 532167-533840 , 009_D18.ab1: 531866-533892 , 037_N13.ab1: 531096-533655 , 046_L11.ab1: 532974-533713 , 053_K18.ab1: 533045-533713

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_660 0.0 - - purine permease, putative [Ricinus communis]
2 Hb_000120_860 0.0709005891 - - nucellin, putative [Ricinus communis]
3 Hb_000000_310 0.1008210233 - - metalloendopeptidase, putative [Ricinus communis]
4 Hb_001009_260 0.1092895497 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X1 [Jatropha curcas]
5 Hb_009674_050 0.1103228684 - - Endosomal P24A protein precursor, putative [Ricinus communis]
6 Hb_002164_020 0.1119635415 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005116_140 0.1133348344 - - PREDICTED: RAN GTPase-activating protein 1 [Jatropha curcas]
8 Hb_026549_070 0.1157844159 - - PREDICTED: UDP-glucuronic acid decarboxylase 1 [Jatropha curcas]
9 Hb_002249_080 0.1192379461 - - lysosomal alpha-mannosidase, putative [Ricinus communis]
10 Hb_030959_010 0.1197970935 - - cullin, putative [Ricinus communis]
11 Hb_009079_050 0.1207778166 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
12 Hb_009252_010 0.1207882584 - - PREDICTED: kinesin light chain [Jatropha curcas]
13 Hb_035834_010 0.1212581154 - - zinc finger protein, putative [Ricinus communis]
14 Hb_001969_140 0.1225368017 - - PREDICTED: uncharacterized protein LOC105634929 [Jatropha curcas]
15 Hb_000920_310 0.1225791711 - - Ran GTPase binding protein, putative [Ricinus communis]
16 Hb_177343_010 0.1242792289 - - PREDICTED: uncharacterized protein LOC105650963 [Jatropha curcas]
17 Hb_130589_010 0.124427187 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
18 Hb_004735_020 0.1252956833 - - PREDICTED: uncharacterized protein LOC105639315 [Jatropha curcas]
19 Hb_000684_390 0.1255080152 - - PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Jatropha curcas]
20 Hb_001628_120 0.1264189054 - - putative ascorbate peroxidase, partial [Taraxacum brevicorniculatum]

Gene co-expression network

sample Hb_000270_660 Hb_000270_660 Hb_000120_860 Hb_000120_860 Hb_000270_660--Hb_000120_860 Hb_000000_310 Hb_000000_310 Hb_000270_660--Hb_000000_310 Hb_001009_260 Hb_001009_260 Hb_000270_660--Hb_001009_260 Hb_009674_050 Hb_009674_050 Hb_000270_660--Hb_009674_050 Hb_002164_020 Hb_002164_020 Hb_000270_660--Hb_002164_020 Hb_005116_140 Hb_005116_140 Hb_000270_660--Hb_005116_140 Hb_000120_860--Hb_001009_260 Hb_000120_860--Hb_000000_310 Hb_030959_010 Hb_030959_010 Hb_000120_860--Hb_030959_010 Hb_000120_860--Hb_005116_140 Hb_003682_070 Hb_003682_070 Hb_000120_860--Hb_003682_070 Hb_000000_310--Hb_003682_070 Hb_000107_250 Hb_000107_250 Hb_000000_310--Hb_000107_250 Hb_000300_510 Hb_000300_510 Hb_000000_310--Hb_000300_510 Hb_000684_390 Hb_000684_390 Hb_000000_310--Hb_000684_390 Hb_000922_060 Hb_000922_060 Hb_000000_310--Hb_000922_060 Hb_130589_010 Hb_130589_010 Hb_001009_260--Hb_130589_010 Hb_002150_020 Hb_002150_020 Hb_001009_260--Hb_002150_020 Hb_005571_010 Hb_005571_010 Hb_001009_260--Hb_005571_010 Hb_004735_020 Hb_004735_020 Hb_001009_260--Hb_004735_020 Hb_000579_040 Hb_000579_040 Hb_001009_260--Hb_000579_040 Hb_003746_010 Hb_003746_010 Hb_009674_050--Hb_003746_010 Hb_002400_060 Hb_002400_060 Hb_009674_050--Hb_002400_060 Hb_005348_110 Hb_005348_110 Hb_009674_050--Hb_005348_110 Hb_009252_010 Hb_009252_010 Hb_009674_050--Hb_009252_010 Hb_009674_050--Hb_030959_010 Hb_009674_050--Hb_005116_140 Hb_001493_060 Hb_001493_060 Hb_002164_020--Hb_001493_060 Hb_026549_070 Hb_026549_070 Hb_002164_020--Hb_026549_070 Hb_009079_050 Hb_009079_050 Hb_002164_020--Hb_009079_050 Hb_000139_300 Hb_000139_300 Hb_002164_020--Hb_000139_300 Hb_000011_220 Hb_000011_220 Hb_002164_020--Hb_000011_220 Hb_009913_040 Hb_009913_040 Hb_002164_020--Hb_009913_040 Hb_005116_140--Hb_030959_010 Hb_002805_090 Hb_002805_090 Hb_005116_140--Hb_002805_090 Hb_002311_130 Hb_002311_130 Hb_005116_140--Hb_002311_130 Hb_000025_500 Hb_000025_500 Hb_005116_140--Hb_000025_500
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.869 47.1076 94.5604 185.012 43.4352 30.559
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
40.1886 13.837 39.4834 73.2924 239.354

CAGE analysis