Hb_000320_360

Information

Type -
Description -
Location Contig320: 277049-289236
Sequence    

Annotation

kegg
ID rcu:RCOM_0904350
description starch synthase, putative (EC:2.4.1.21)
nr
ID XP_012091336.1
description PREDICTED: starch synthase 3, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
swissprot
ID Q43846
description Soluble starch synthase 3, chloroplastic/amyloplastic OS=Solanum tuberosum GN=SS3 PE=1 SV=1
trembl
ID A0A067JDD5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21214 PE=3 SV=1
Gene Ontology
ID GO:0009011
description starch synthase chloroplastic amyloplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33826: 277293-289324 , PASA_asmbl_33827: 277417-289250
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000320_360 0.0 - - PREDICTED: starch synthase 3, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
2 Hb_013399_090 0.0962019794 - - PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
3 Hb_000359_220 0.1070487238 - - PREDICTED: pentatricopeptide repeat-containing protein At2g42920, chloroplastic [Jatropha curcas]
4 Hb_015778_060 0.1112166823 - - PREDICTED: uncharacterized protein LOC105650696 [Jatropha curcas]
5 Hb_001408_120 0.111219442 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
6 Hb_002942_130 0.111431835 - - PREDICTED: chaperone protein ClpC, chloroplastic [Jatropha curcas]
7 Hb_000008_410 0.112675489 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Hevea brasiliensis]
8 Hb_014006_010 0.1128612879 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
9 Hb_011616_040 0.1179226374 - - glucan water dikinase 3, partial [Manihot esculenta]
10 Hb_002249_030 0.1220616984 - - PREDICTED: chaperone protein ClpC, chloroplastic [Jatropha curcas]
11 Hb_004294_020 0.1238527896 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
12 Hb_001269_050 0.1240273676 - - PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]
13 Hb_002078_470 0.1304745663 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 4 isoform X1 [Jatropha curcas]
14 Hb_000186_080 0.1307011393 - - PREDICTED: protein unc-45 homolog B-like [Gossypium raimondii]
15 Hb_000445_130 0.1340252802 transcription factor TF Family: C3H hypothetical protein JCGZ_12159 [Jatropha curcas]
16 Hb_004586_090 0.1344501945 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Jatropha curcas]
17 Hb_003734_080 0.1350211179 - - myosin vIII, putative [Ricinus communis]
18 Hb_002016_050 0.1350804141 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
19 Hb_000175_270 0.1359546385 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]
20 Hb_065408_010 0.1359574338 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000320_360 Hb_000320_360 Hb_013399_090 Hb_013399_090 Hb_000320_360--Hb_013399_090 Hb_000359_220 Hb_000359_220 Hb_000320_360--Hb_000359_220 Hb_015778_060 Hb_015778_060 Hb_000320_360--Hb_015778_060 Hb_001408_120 Hb_001408_120 Hb_000320_360--Hb_001408_120 Hb_002942_130 Hb_002942_130 Hb_000320_360--Hb_002942_130 Hb_000008_410 Hb_000008_410 Hb_000320_360--Hb_000008_410 Hb_014006_010 Hb_014006_010 Hb_013399_090--Hb_014006_010 Hb_000340_360 Hb_000340_360 Hb_013399_090--Hb_000340_360 Hb_000025_500 Hb_000025_500 Hb_013399_090--Hb_000025_500 Hb_013399_090--Hb_001408_120 Hb_004586_090 Hb_004586_090 Hb_013399_090--Hb_004586_090 Hb_001411_050 Hb_001411_050 Hb_000359_220--Hb_001411_050 Hb_000359_220--Hb_013399_090 Hb_000906_070 Hb_000906_070 Hb_000359_220--Hb_000906_070 Hb_006846_080 Hb_006846_080 Hb_000359_220--Hb_006846_080 Hb_001411_030 Hb_001411_030 Hb_000359_220--Hb_001411_030 Hb_002973_110 Hb_002973_110 Hb_015778_060--Hb_002973_110 Hb_000186_080 Hb_000186_080 Hb_015778_060--Hb_000186_080 Hb_002986_070 Hb_002986_070 Hb_015778_060--Hb_002986_070 Hb_015778_060--Hb_013399_090 Hb_021079_020 Hb_021079_020 Hb_015778_060--Hb_021079_020 Hb_001408_120--Hb_000186_080 Hb_001408_120--Hb_000008_410 Hb_001341_010 Hb_001341_010 Hb_001408_120--Hb_001341_010 Hb_052946_010 Hb_052946_010 Hb_001408_120--Hb_052946_010 Hb_001726_100 Hb_001726_100 Hb_001408_120--Hb_001726_100 Hb_004254_100 Hb_004254_100 Hb_002942_130--Hb_004254_100 Hb_001437_120 Hb_001437_120 Hb_002942_130--Hb_001437_120 Hb_003734_080 Hb_003734_080 Hb_002942_130--Hb_003734_080 Hb_007192_090 Hb_007192_090 Hb_002942_130--Hb_007192_090 Hb_011616_040 Hb_011616_040 Hb_002942_130--Hb_011616_040 Hb_007120_060 Hb_007120_060 Hb_000008_410--Hb_007120_060 Hb_000200_110 Hb_000200_110 Hb_000008_410--Hb_000200_110 Hb_012022_060 Hb_012022_060 Hb_000008_410--Hb_012022_060 Hb_004294_020 Hb_004294_020 Hb_000008_410--Hb_004294_020 Hb_001999_140 Hb_001999_140 Hb_000008_410--Hb_001999_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.169 49.0418 29.5733 21.0481 19.9821 12.134
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.68853 3.85688 6.10384 28.1684 71.0107

CAGE analysis